Variant report

Variant	rs413599
Chromosome Location	chr6:113964111-113964112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:113959124..113960950-chr6:113962828..113965143,2	MCF-7	breast:
2	chr6:113809466..113812026-chr6:113961863..113964476,2	MCF-7	breast:
3	chr6:113958397..113961300-chr6:113962651..113965276,2	MCF-7	breast:
4	chr6:113962572..113972353-chr6:114176344..114182135,15	MCF-7	breast:
5	chr6:113963984..113967519-chr6:114178085..114180547,4	MCF-7	breast:
6	chr6:113851813..113853659-chr6:113964029..113966522,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction
ENSG00000236347	Chromatin interaction

rs_ID	r²[population]
rs11153426	0.82[AFR][1000 genomes]
rs1339040	0.84[YRI][hapmap];0.82[AFR][1000 genomes]
rs422286	0.89[AFR][1000 genomes]
rs4945962	0.82[AFR][1000 genomes]
rs6930982	0.82[AFR][1000 genomes]
rs9387158	0.84[YRI][hapmap]
rs9400647	0.82[AFR][1000 genomes]

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113954200-113965600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:113954200-113970600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:113954400-113964400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:113954600-113970400	Weak transcription	Right Atrium	heart
5	chr6:113956800-113966400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:113959400-113972000	Weak transcription	Gastric	stomach
7	chr6:113960800-113967600	Enhancers	Fetal Intestine Small	intestine
8	chr6:113961600-113964200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:113962600-113967600	Enhancers	Fetal Intestine Large	intestine
10	chr6:113962800-113964400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr6:113963600-113964200	Flanking Active TSS	Duodenum Mucosa	Duodenum
12	chr6:113963600-113964800	Enhancers	Primary B cells from peripheral blood	blood
13	chr6:113963600-113964800	Flanking Active TSS	GM12878-XiMat	blood
14	chr6:113963600-113965600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr6:113963600-113967600	Enhancers	Fetal Heart	heart
16	chr6:113963600-113967600	Enhancers	Placenta	Placenta
17	chr6:113963800-113964200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr6:113963800-113964200	Enhancers	Pancreas	Pancrea
19	chr6:113963800-113964200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
20	chr6:113963800-113964200	Active TSS	Rectal Smooth Muscle	rectum
21	chr6:113963800-113964400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
22	chr6:113963800-113964400	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr6:113963800-113964600	Flanking Active TSS	Liver	Liver
24	chr6:113963800-113964600	Enhancers	Fetal Muscle Leg	muscle
25	chr6:113963800-113964600	Enhancers	Right Ventricle	heart
26	chr6:113963800-113964800	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr6:113963800-113964800	Enhancers	Fetal Lung	lung
28	chr6:113963800-113964800	Flanking Active TSS	A549	lung
29	chr6:113963800-113965000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:113963800-113965000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr6:113964000-113964200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
32	chr6:113964000-113964400	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr6:113964000-113964400	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr6:113964000-113964400	Enhancers	Adipose Nuclei	Adipose
35	chr6:113964000-113964400	Enhancers	Colon Smooth Muscle	Colon
36	chr6:113964000-113964400	Enhancers	Small Intestine	intestine
37	chr6:113964000-113964400	Flanking Active TSS	Stomach Mucosa	stomach
38	chr6:113964000-113964600	Enhancers	Fetal Thymus	thymus
39	chr6:113964000-113964600	Enhancers	Left Ventricle	heart
40	chr6:113964000-113964600	Enhancers	Hela-S3	cervix
41	chr6:113964000-113964600	Enhancers	NHLF	lung
42	chr6:113964000-113964800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
43	chr6:113964000-113964800	Enhancers	Muscle Satellite Cultured Cells	--
44	chr6:113964000-113964800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:113964000-113964800	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr6:113964000-113964800	Enhancers	K562	blood
47	chr6:113964000-113964800	Enhancers	NHEK	skin
48	chr6:113964000-113964800	Enhancers	Osteobl	bone
49	chr6:113964000-113967400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:113964000-113967400	Enhancers	HepG2	liver

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