Variant report

Variant	rs9384877
Chromosome Location	chr6:113965105-113965106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:113964552..113967035-chr6:114182588..114184413,2	MCF-7	breast:
2	chr6:113959124..113960950-chr6:113962828..113965143,2	MCF-7	breast:
3	chr6:113958397..113961300-chr6:113962651..113965276,2	MCF-7	breast:
4	chr6:113962572..113972353-chr6:114176344..114182135,15	MCF-7	breast:
5	chr6:113963984..113967519-chr6:114178085..114180547,4	MCF-7	breast:
6	chr6:113851813..113853659-chr6:113964029..113966522,2	MCF-7	breast:
7	chr6:113815586..113817124-chr6:113964551..113966518,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction
ENSG00000236347	Chromatin interaction

rs_ID	r²[population]
rs10732719	0.83[AFR][1000 genomes]
rs11153426	0.86[AFR][1000 genomes]
rs1339040	0.86[AFR][1000 genomes]
rs1538460	0.86[AFR][1000 genomes]
rs2003888	0.92[AFR][1000 genomes]
rs2127989	0.86[AFR][1000 genomes]
rs4945962	0.86[AFR][1000 genomes]
rs6911610	0.86[AFR][1000 genomes]
rs6925360	0.83[AFR][1000 genomes]
rs6930982	0.86[AFR][1000 genomes]
rs9374413	0.86[AFR][1000 genomes]
rs9387158	0.83[AFR][1000 genomes]
rs9387163	0.86[AFR][1000 genomes]
rs9400646	0.83[AFR][1000 genomes]
rs9400647	0.86[AFR][1000 genomes]

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113954200-113965600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:113954200-113970600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:113954600-113970400	Weak transcription	Right Atrium	heart
4	chr6:113956800-113966400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:113959400-113972000	Weak transcription	Gastric	stomach
6	chr6:113960800-113967600	Enhancers	Fetal Intestine Small	intestine
7	chr6:113962600-113967600	Enhancers	Fetal Intestine Large	intestine
8	chr6:113963600-113965600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:113963600-113967600	Enhancers	Fetal Heart	heart
10	chr6:113963600-113967600	Enhancers	Placenta	Placenta
11	chr6:113964000-113967400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:113964000-113967400	Enhancers	HepG2	liver
13	chr6:113964000-113967600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:113964000-113968000	Weak transcription	Primary B cells from cord blood	blood
15	chr6:113964000-113969800	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr6:113964200-113965600	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr6:113964200-113966400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:113964200-113966600	Weak transcription	Pancreas	Pancrea
19	chr6:113964200-113967000	Enhancers	Duodenum Mucosa	Duodenum
20	chr6:113964400-113965200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr6:113964400-113965200	Weak transcription	Small Intestine	intestine
22	chr6:113964400-113966000	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr6:113964400-113968400	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr6:113964400-113970200	Weak transcription	Adipose Nuclei	Adipose
25	chr6:113964600-113965400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr6:113964600-113965400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:113964600-113965600	Weak transcription	Hela-S3	cervix
28	chr6:113964600-113965800	Weak transcription	NHLF	lung
29	chr6:113964600-113966600	Weak transcription	Fetal Muscle Leg	muscle
30	chr6:113964600-113966800	Weak transcription	Fetal Thymus	thymus
31	chr6:113964600-113970600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:113964600-113970600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:113964800-113965200	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr6:113964800-113965200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:113964800-113965200	Weak transcription	NH-A	brain
36	chr6:113964800-113965200	Weak transcription	NHDF-Ad	bronchial
37	chr6:113964800-113965200	Weak transcription	NHEK	skin
38	chr6:113964800-113965200	Weak transcription	Osteobl	bone
39	chr6:113964800-113965400	Enhancers	GM12878-XiMat	blood
40	chr6:113964800-113965800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr6:113964800-113966000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr6:113964800-113966800	Weak transcription	Primary B cells from peripheral blood	blood
43	chr6:113964800-113967400	Enhancers	Stomach Mucosa	stomach
44	chr6:113964800-113967400	Enhancers	A549	lung
45	chr6:113964800-113968200	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr6:113964800-113969800	Weak transcription	Liver	Liver
47	chr6:113964800-113972400	Weak transcription	Fetal Lung	lung
48	chr6:113965000-113966600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr6:113965000-113971200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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