Variant report

Variant	rs13212281
Chromosome Location	chr6:113958500-113958501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr6:113958156-113958561	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113958397..113961300-chr6:113962651..113965276,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230943	TF binding region

rs_ID	r²[population]
rs1339040	0.92[YRI][hapmap]
rs4945962	0.84[YRI][hapmap]
rs9387158	0.92[YRI][hapmap]
rs9400647	0.84[YRI][hapmap]

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113954000-113958600	Enhancers	HepG2	liver
2	chr6:113954000-113963800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:113954200-113965600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:113954200-113970600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:113954400-113961200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:113954400-113964000	Weak transcription	Left Ventricle	heart
7	chr6:113954400-113964400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:113954600-113970400	Weak transcription	Right Atrium	heart
9	chr6:113955200-113959000	Enhancers	Hela-S3	cervix
10	chr6:113955600-113961000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:113956000-113958800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:113956800-113966400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:113957200-113962600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr6:113957400-113958800	Enhancers	Placenta	Placenta
15	chr6:113957400-113959400	Enhancers	Stomach Mucosa	stomach
16	chr6:113957800-113964000	Weak transcription	Osteobl	bone
17	chr6:113958000-113958800	Weak transcription	Gastric	stomach
18	chr6:113958000-113958800	Weak transcription	Pancreas	Pancrea
19	chr6:113958000-113959200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:113958000-113962600	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr6:113958000-113963200	Weak transcription	Liver	Liver
22	chr6:113958200-113961000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:113958200-113961200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr6:113958200-113963400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr6:113958400-113959600	Enhancers	GM12878-XiMat	blood
26	chr6:113958400-113960800	Weak transcription	Fetal Intestine Small	intestine
27	chr6:113958400-113961000	Weak transcription	Fetal Intestine Large	intestine
28	chr6:113958400-113963400	Weak transcription	A549	lung
29	chr6:113958400-113963600	Weak transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links