Variant report

Variant	rs7753356
Chromosome Location	chr6:113817951-113817952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113817087..113819797-chr6:113821858..113823448,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1481432	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1585973	0.88[ASN][1000 genomes]
rs1600767	0.88[ASN][1000 genomes]
rs17075218	1.00[ASN][1000 genomes]
rs17075221	1.00[ASN][1000 genomes]
rs1904994	0.88[ASN][1000 genomes]
rs1982686	0.88[ASN][1000 genomes]
rs2179113	0.81[ASN][1000 genomes]
rs2493882	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2493884	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2493891	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3963300	0.88[ASN][1000 genomes]
rs531979	0.88[ASN][1000 genomes]
rs547797	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs549875	0.88[ASN][1000 genomes]
rs56303196	1.00[ASN][1000 genomes]
rs58875635	0.88[ASN][1000 genomes]
rs59950054	1.00[ASN][1000 genomes]
rs61320559	0.88[ASN][1000 genomes]
rs61734440	0.82[ASN][1000 genomes]
rs6910647	0.81[ASN][1000 genomes]
rs6913809	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6935853	0.88[ASN][1000 genomes]
rs6942149	0.88[ASN][1000 genomes]
rs73531703	0.88[ASN][1000 genomes]
rs73531704	0.88[ASN][1000 genomes]
rs73531705	0.88[ASN][1000 genomes]
rs73531708	0.88[ASN][1000 genomes]
rs73531717	0.88[ASN][1000 genomes]
rs73543899	0.81[ASN][1000 genomes]
rs73547807	1.00[ASN][1000 genomes]
rs73547876	1.00[ASN][1000 genomes]
rs73547891	1.00[ASN][1000 genomes]
rs73549618	0.88[ASN][1000 genomes]
rs73549630	0.88[ASN][1000 genomes]
rs73549634	0.88[ASN][1000 genomes]
rs73549650	0.88[ASN][1000 genomes]
rs73549655	0.88[ASN][1000 genomes]
rs73765222	1.00[ASN][1000 genomes]
rs73765232	1.00[ASN][1000 genomes]
rs73765248	0.88[ASN][1000 genomes]
rs7745709	1.00[ASN][1000 genomes]
rs7753869	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7754686	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7758523	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7759659	0.88[ASN][1000 genomes]
rs7762969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9320461	0.81[ASN][1000 genomes]
rs9481370	0.88[ASN][1000 genomes]
rs9488197	0.81[ASN][1000 genomes]
rs9488203	0.88[ASN][1000 genomes]
rs9488204	0.88[ASN][1000 genomes]
rs9488238	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113816400-113818000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:113816600-113818000	Enhancers	HSMM	muscle
3	chr6:113817200-113818400	Flanking Active TSS	HUVEC	blood vessel
4	chr6:113817400-113818000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:113817600-113818000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:113817600-113821200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:113817600-113821200	Weak transcription	NHEK	skin
8	chr6:113817800-113818000	Enhancers	NH-A	brain

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