Variant report

Variant	rs73531717
Chromosome Location	chr6:113886788-113886789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113879729..113882473-chr6:113886043..113888473,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1481432	1.00[ASN][1000 genomes]
rs1585973	1.00[ASN][1000 genomes]
rs1600767	1.00[ASN][1000 genomes]
rs17075218	0.88[ASN][1000 genomes]
rs17075221	0.88[ASN][1000 genomes]
rs1904994	1.00[ASN][1000 genomes]
rs1982686	1.00[ASN][1000 genomes]
rs2493884	0.88[ASN][1000 genomes]
rs2493891	1.00[ASN][1000 genomes]
rs3963300	1.00[ASN][1000 genomes]
rs531979	1.00[ASN][1000 genomes]
rs547797	1.00[ASN][1000 genomes]
rs549875	1.00[ASN][1000 genomes]
rs56303196	0.88[ASN][1000 genomes]
rs58875635	1.00[ASN][1000 genomes]
rs59950054	0.88[ASN][1000 genomes]
rs61320559	1.00[ASN][1000 genomes]
rs61734440	0.94[ASN][1000 genomes]
rs6913809	1.00[ASN][1000 genomes]
rs6935853	1.00[ASN][1000 genomes]
rs6942149	1.00[ASN][1000 genomes]
rs73531703	1.00[ASN][1000 genomes]
rs73531704	1.00[ASN][1000 genomes]
rs73531705	1.00[ASN][1000 genomes]
rs73531708	1.00[ASN][1000 genomes]
rs73547807	0.88[ASN][1000 genomes]
rs73547876	0.88[ASN][1000 genomes]
rs73547891	0.88[ASN][1000 genomes]
rs73549618	1.00[ASN][1000 genomes]
rs73549630	1.00[ASN][1000 genomes]
rs73549634	1.00[ASN][1000 genomes]
rs73549650	1.00[ASN][1000 genomes]
rs73549652	0.89[ASN][1000 genomes]
rs73549655	1.00[ASN][1000 genomes]
rs73765222	0.88[ASN][1000 genomes]
rs73765232	0.88[ASN][1000 genomes]
rs73765248	1.00[ASN][1000 genomes]
rs7745709	0.88[ASN][1000 genomes]
rs7753356	0.88[ASN][1000 genomes]
rs7753869	0.88[ASN][1000 genomes]
rs7754686	0.88[ASN][1000 genomes]
rs7758523	0.88[ASN][1000 genomes]
rs7759659	1.00[ASN][1000 genomes]
rs7762969	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113885400-113887000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:113885400-113887000	Flanking Active TSS	NHDF-Ad	bronchial
3	chr6:113885600-113886800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr6:113885600-113886800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
5	chr6:113885600-113886800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:113885600-113886800	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr6:113885600-113886800	Active TSS	Brain Anterior Caudate	brain
8	chr6:113885600-113886800	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr6:113885600-113886800	Flanking Active TSS	Fetal Lung	lung
10	chr6:113885600-113886800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr6:113885600-113886800	Flanking Active TSS	HSMMtube	muscle
12	chr6:113885600-113886800	Flanking Active TSS	NH-A	brain
13	chr6:113885600-113886800	Flanking Active TSS	NHLF	lung
14	chr6:113885600-113886800	Flanking Active TSS	Osteobl	bone
15	chr6:113885600-113887200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:113885800-113886800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr6:113885800-113886800	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr6:113885800-113886800	Enhancers	Primary B cells from cord blood	blood
19	chr6:113885800-113886800	Enhancers	Primary B cells from peripheral blood	blood
20	chr6:113886000-113886800	Enhancers	Fetal Brain Male	brain
21	chr6:113886200-113886800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:113886200-113886800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:113886200-113892400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:113886400-113886800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
25	chr6:113886400-113886800	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr6:113886400-113886800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:113886400-113886800	Flanking Active TSS	Brain Substantia Nigra	brain
28	chr6:113886400-113886800	Flanking Active TSS	Fetal Kidney	kidney
29	chr6:113886400-113886800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr6:113886400-113886800	Flanking Active TSS	Rectal Smooth Muscle	rectum
31	chr6:113886400-113886800	Active TSS	Skeletal Muscle Female	skeletal muscle
32	chr6:113886400-113887400	Enhancers	Fetal Muscle Leg	muscle
33	chr6:113886400-113887600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:113886400-113895400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:113886600-113886800	Enhancers	H1 Cell Line	embryonic stem cell
36	chr6:113886600-113886800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
37	chr6:113886600-113886800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:113886600-113886800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:113886600-113886800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:113886600-113886800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr6:113886600-113886800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:113886600-113886800	Enhancers	Brain Cingulate Gyrus	brain
43	chr6:113886600-113886800	Enhancers	Brain Hippocampus Middle	brain
44	chr6:113886600-113886800	Flanking Active TSS	Colon Smooth Muscle	Colon
45	chr6:113886600-113886800	Enhancers	Ovary	ovary
46	chr6:113886600-113886800	Active TSS	Stomach Smooth Muscle	stomach
47	chr6:113886600-113886800	Enhancers	HSMM	muscle
48	chr6:113886600-113887000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:113886600-113887000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr6:113886600-113887000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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