Variant report

Variant	rs73549650
Chromosome Location	chr6:113868336-113868337
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113861736..113863744-chr6:113866553..113868522,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1481432	1.00[ASN][1000 genomes]
rs1585973	1.00[ASN][1000 genomes]
rs1600767	1.00[ASN][1000 genomes]
rs17075218	0.88[ASN][1000 genomes]
rs17075221	0.88[ASN][1000 genomes]
rs1904994	1.00[ASN][1000 genomes]
rs1982686	1.00[ASN][1000 genomes]
rs2493884	0.88[ASN][1000 genomes]
rs2493891	1.00[ASN][1000 genomes]
rs3963300	1.00[ASN][1000 genomes]
rs531979	1.00[ASN][1000 genomes]
rs547797	1.00[ASN][1000 genomes]
rs549875	1.00[ASN][1000 genomes]
rs56303196	0.88[ASN][1000 genomes]
rs58875635	1.00[ASN][1000 genomes]
rs59950054	0.88[ASN][1000 genomes]
rs60312258	1.00[AMR][1000 genomes]
rs61320559	1.00[ASN][1000 genomes]
rs61734440	0.94[ASN][1000 genomes]
rs6913809	1.00[ASN][1000 genomes]
rs6935853	1.00[ASN][1000 genomes]
rs6942149	1.00[ASN][1000 genomes]
rs73531703	1.00[ASN][1000 genomes]
rs73531704	1.00[ASN][1000 genomes]
rs73531705	1.00[ASN][1000 genomes]
rs73531708	1.00[ASN][1000 genomes]
rs73531717	1.00[ASN][1000 genomes]
rs73547807	0.88[ASN][1000 genomes]
rs73547876	0.88[ASN][1000 genomes]
rs73547891	0.88[ASN][1000 genomes]
rs73549618	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73549630	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73549634	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73549652	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73549655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73765222	0.88[ASN][1000 genomes]
rs73765232	0.88[ASN][1000 genomes]
rs73765248	1.00[ASN][1000 genomes]
rs7745709	0.88[ASN][1000 genomes]
rs7753356	0.88[ASN][1000 genomes]
rs7753869	0.88[ASN][1000 genomes]
rs7754686	0.88[ASN][1000 genomes]
rs7758523	0.88[ASN][1000 genomes]
rs7759659	1.00[ASN][1000 genomes]
rs7762969	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv981078	chr6:113851437-113874497	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113867400-113880600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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