Variant report

Variant	rs56303196
Chromosome Location	chr6:113816908-113816909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:113815734..113817524-chr6:113828858..113831108,3	MCF-7	breast:
2	chr6:113813279..113817762-chr6:114178339..114180190,4	MCF-7	breast:
3	chr6:113815586..113817124-chr6:113964551..113966518,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1481432	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1585973	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1600767	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17075218	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075221	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904994	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1982686	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2179113	0.81[ASN][1000 genomes]
rs2493884	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2493885	1.00[EUR][1000 genomes]
rs2493891	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3963300	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4337960	1.00[EUR][1000 genomes]
rs531979	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs547797	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs549875	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57194334	1.00[EUR][1000 genomes]
rs58875635	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58891033	1.00[EUR][1000 genomes]
rs59844934	1.00[EUR][1000 genomes]
rs59950054	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60295562	1.00[EUR][1000 genomes]
rs60504130	1.00[EUR][1000 genomes]
rs61320559	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61734440	0.82[ASN][1000 genomes]
rs6910647	0.81[ASN][1000 genomes]
rs6913809	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6926011	1.00[EUR][1000 genomes]
rs6935853	0.88[ASN][1000 genomes]
rs6942149	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73531703	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73531704	0.88[ASN][1000 genomes]
rs73531705	0.88[ASN][1000 genomes]
rs73531708	0.88[ASN][1000 genomes]
rs73531717	0.88[ASN][1000 genomes]
rs73543899	0.81[ASN][1000 genomes]
rs73547807	1.00[ASN][1000 genomes]
rs73547876	1.00[ASN][1000 genomes]
rs73547891	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549618	0.88[ASN][1000 genomes]
rs73549630	0.88[ASN][1000 genomes]
rs73549634	0.88[ASN][1000 genomes]
rs73549650	0.88[ASN][1000 genomes]
rs73549655	0.88[ASN][1000 genomes]
rs73765222	1.00[ASN][1000 genomes]
rs73765224	1.00[EUR][1000 genomes]
rs73765225	1.00[EUR][1000 genomes]
rs73765232	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73765247	1.00[EUR][1000 genomes]
rs73765248	0.88[ASN][1000 genomes]
rs73765256	1.00[EUR][1000 genomes]
rs73765261	1.00[EUR][1000 genomes]
rs73765266	1.00[EUR][1000 genomes]
rs73765267	1.00[EUR][1000 genomes]
rs73765271	1.00[EUR][1000 genomes]
rs73765272	1.00[EUR][1000 genomes]
rs73765273	1.00[EUR][1000 genomes]
rs73765283	1.00[EUR][1000 genomes]
rs7745709	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749447	1.00[EUR][1000 genomes]
rs7752840	1.00[EUR][1000 genomes]
rs7753356	1.00[ASN][1000 genomes]
rs7753869	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754686	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758523	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759659	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7762969	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9320461	0.81[ASN][1000 genomes]
rs9481370	0.88[ASN][1000 genomes]
rs9488197	0.81[ASN][1000 genomes]
rs9488203	0.88[ASN][1000 genomes]
rs9488204	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113811600-113817200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:113813800-113817600	Enhancers	Placenta	Placenta
3	chr6:113815400-113817000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:113815800-113817200	Enhancers	HUVEC	blood vessel
5	chr6:113816000-113817600	Enhancers	Placenta Amnion	Placenta Amnion
6	chr6:113816200-113817400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:113816400-113817000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:113816400-113817400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:113816400-113817600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:113816400-113817600	Enhancers	NHEK	skin
11	chr6:113816400-113818000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:113816600-113817400	Enhancers	Hela-S3	cervix
13	chr6:113816600-113817400	Enhancers	NH-A	brain
14	chr6:113816600-113817600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:113816600-113817600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:113816600-113817600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:113816600-113817600	Enhancers	NHDF-Ad	bronchial
18	chr6:113816600-113817800	Enhancers	Osteobl	bone
19	chr6:113816600-113818000	Enhancers	HSMM	muscle
20	chr6:113816800-113817000	Enhancers	HMEC	breast
21	chr6:113816800-113817400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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