Variant report

Variant	rs73543899
Chromosome Location	chr6:113786329-113786330
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17075218	0.81[ASN][1000 genomes]
rs17075221	0.81[ASN][1000 genomes]
rs2179113	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2493884	0.81[ASN][1000 genomes]
rs56303196	0.81[ASN][1000 genomes]
rs59950054	0.81[ASN][1000 genomes]
rs6910647	1.00[ASN][1000 genomes]
rs73547807	0.81[ASN][1000 genomes]
rs73547876	0.81[ASN][1000 genomes]
rs73547891	0.81[ASN][1000 genomes]
rs73765222	0.81[ASN][1000 genomes]
rs73765232	0.81[ASN][1000 genomes]
rs7745709	0.81[ASN][1000 genomes]
rs7753356	0.81[ASN][1000 genomes]
rs7753869	0.81[ASN][1000 genomes]
rs7754686	0.81[ASN][1000 genomes]
rs7758523	0.81[ASN][1000 genomes]
rs9320461	1.00[ASN][1000 genomes]
rs9481370	0.94[ASN][1000 genomes]
rs9488197	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488203	0.94[ASN][1000 genomes]
rs9488204	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv518991	chr6:113760526-113799618	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113785000-113787000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:113785000-113787200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:113785200-113788800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:113785200-113788800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr6:113785400-113786600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:113785400-113786800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:113785400-113787000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:113785400-113787000	Enhancers	HMEC	breast
9	chr6:113785400-113787000	Enhancers	HUVEC	blood vessel
10	chr6:113785400-113787000	Enhancers	NHEK	skin
11	chr6:113785400-113787000	Enhancers	NHLF	lung
12	chr6:113785400-113787000	Enhancers	Osteobl	bone
13	chr6:113785400-113787200	Enhancers	Hela-S3	cervix
14	chr6:113785400-113787400	Enhancers	NHDF-Ad	bronchial
15	chr6:113785400-113787800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:113785600-113786400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:113785600-113786400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:113785600-113787000	Enhancers	A549	lung
19	chr6:113785600-113787000	Enhancers	NH-A	brain
20	chr6:113785800-113786400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:113785800-113786400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:113785800-113786600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr6:113785800-113786600	Enhancers	HSMM	muscle
24	chr6:113785800-113786800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:113786000-113786400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
26	chr6:113786000-113787000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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