Variant report

Variant	rs58891033
Chromosome Location	chr6:113885362-113885363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1481432	1.00[EUR][1000 genomes]
rs1585973	1.00[EUR][1000 genomes]
rs1600767	1.00[EUR][1000 genomes]
rs17075218	1.00[EUR][1000 genomes]
rs17075221	1.00[EUR][1000 genomes]
rs1904994	1.00[EUR][1000 genomes]
rs1982686	1.00[EUR][1000 genomes]
rs2493884	1.00[EUR][1000 genomes]
rs2493885	1.00[EUR][1000 genomes]
rs2493891	1.00[EUR][1000 genomes]
rs3963300	1.00[EUR][1000 genomes]
rs4337960	1.00[EUR][1000 genomes]
rs531979	1.00[EUR][1000 genomes]
rs547797	1.00[EUR][1000 genomes]
rs549875	1.00[EUR][1000 genomes]
rs56303196	1.00[EUR][1000 genomes]
rs57194334	1.00[EUR][1000 genomes]
rs58875635	1.00[EUR][1000 genomes]
rs59844934	1.00[EUR][1000 genomes]
rs59950054	1.00[EUR][1000 genomes]
rs60295562	1.00[EUR][1000 genomes]
rs60504130	1.00[EUR][1000 genomes]
rs61320559	1.00[EUR][1000 genomes]
rs6913809	1.00[EUR][1000 genomes]
rs6926011	1.00[EUR][1000 genomes]
rs6942149	1.00[EUR][1000 genomes]
rs73531703	1.00[EUR][1000 genomes]
rs73547891	1.00[EUR][1000 genomes]
rs73765224	1.00[EUR][1000 genomes]
rs73765225	1.00[EUR][1000 genomes]
rs73765247	1.00[EUR][1000 genomes]
rs73765256	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73765261	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73765266	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73765267	1.00[EUR][1000 genomes]
rs73765271	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73765272	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73765273	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73765283	1.00[EUR][1000 genomes]
rs7745709	1.00[EUR][1000 genomes]
rs7749447	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7752840	1.00[EUR][1000 genomes]
rs7753869	1.00[EUR][1000 genomes]
rs7754686	1.00[EUR][1000 genomes]
rs7758523	1.00[EUR][1000 genomes]
rs7759659	1.00[EUR][1000 genomes]
rs7762969	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv3344043	chr6:113884509-113886407	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113876600-113885600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:113877600-113885600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:113878800-113885600	Weak transcription	Fetal Intestine Small	intestine
4	chr6:113879600-113885600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:113879800-113885600	Weak transcription	Fetal Brain Female	brain
6	chr6:113880000-113885800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:113880400-113885600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:113880400-113885600	Weak transcription	Ovary	ovary
9	chr6:113880600-113885600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:113880600-113885600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:113880600-113885800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:113880800-113885400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:113880800-113885600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:113880800-113885600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:113880800-113885600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:113880800-113885600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:113880800-113885600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:113881000-113885400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:113881000-113885600	Weak transcription	Colon Smooth Muscle	Colon
20	chr6:113881200-113885400	Weak transcription	Fetal Brain Male	brain
21	chr6:113881200-113885600	Weak transcription	Fetal Lung	lung
22	chr6:113882000-113885600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr6:113882400-113885600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:113882600-113885600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:113882800-113885400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:113882800-113885800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:113883000-113885400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:113883000-113885400	Weak transcription	Osteobl	bone
29	chr6:113883000-113885600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:113883000-113885600	Weak transcription	HSMMtube	muscle
31	chr6:113883000-113885600	Weak transcription	HUVEC	blood vessel
32	chr6:113883200-113885400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr6:113883200-113885400	Weak transcription	HSMM	muscle
34	chr6:113883200-113885600	Weak transcription	HMEC	breast
35	chr6:113883800-113885400	Enhancers	NHDF-Ad	bronchial
36	chr6:113884200-113885400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr6:113884200-113885600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:113884200-113885600	Weak transcription	GM12878-XiMat	blood
39	chr6:113884400-113885400	Enhancers	HepG2	liver
40	chr6:113884400-113885600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr6:113884400-113885600	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr6:113884400-113885600	Enhancers	NHLF	lung
43	chr6:113884400-113885800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:113884400-113885800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr6:113884400-113886000	Enhancers	Fetal Muscle Leg	muscle
46	chr6:113884600-113885600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:113884600-113885600	Weak transcription	NH-A	brain
48	chr6:113884600-113885800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr6:113885000-113885600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr6:113885000-113885600	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links