Variant report

Variant	rs57194334
Chromosome Location	chr6:113804140-113804141
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113799640..113802302-chr6:113802740..113805019,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10484460	1.00[AMR][1000 genomes]
rs1481432	1.00[EUR][1000 genomes]
rs1585973	1.00[EUR][1000 genomes]
rs1600767	1.00[EUR][1000 genomes]
rs17075154	1.00[AMR][1000 genomes]
rs17075210	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075218	1.00[EUR][1000 genomes]
rs17075221	1.00[EUR][1000 genomes]
rs1904994	1.00[EUR][1000 genomes]
rs1982686	1.00[EUR][1000 genomes]
rs2493884	1.00[EUR][1000 genomes]
rs2493885	1.00[EUR][1000 genomes]
rs2493891	1.00[EUR][1000 genomes]
rs3963300	1.00[EUR][1000 genomes]
rs4337960	1.00[EUR][1000 genomes]
rs531979	1.00[EUR][1000 genomes]
rs547797	1.00[EUR][1000 genomes]
rs549875	1.00[EUR][1000 genomes]
rs55812012	1.00[AMR][1000 genomes]
rs56303196	1.00[EUR][1000 genomes]
rs57950622	1.00[AMR][1000 genomes]
rs58875635	1.00[EUR][1000 genomes]
rs58891033	1.00[EUR][1000 genomes]
rs59844934	1.00[EUR][1000 genomes]
rs59950054	1.00[EUR][1000 genomes]
rs60295562	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60504130	1.00[EUR][1000 genomes]
rs60729491	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61320559	1.00[EUR][1000 genomes]
rs6913809	1.00[EUR][1000 genomes]
rs6926011	1.00[EUR][1000 genomes]
rs6942149	1.00[EUR][1000 genomes]
rs73531703	1.00[EUR][1000 genomes]
rs73547891	1.00[EUR][1000 genomes]
rs73765216	1.00[AMR][1000 genomes]
rs73765218	1.00[AMR][1000 genomes]
rs73765224	1.00[EUR][1000 genomes]
rs73765225	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73765247	1.00[EUR][1000 genomes]
rs73765256	1.00[EUR][1000 genomes]
rs73765261	1.00[EUR][1000 genomes]
rs73765266	1.00[EUR][1000 genomes]
rs73765267	1.00[EUR][1000 genomes]
rs73765271	1.00[EUR][1000 genomes]
rs73765272	1.00[EUR][1000 genomes]
rs73765273	1.00[EUR][1000 genomes]
rs73765283	1.00[EUR][1000 genomes]
rs7740950	1.00[AMR][1000 genomes]
rs7745709	1.00[EUR][1000 genomes]
rs7749447	1.00[EUR][1000 genomes]
rs7752840	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7753869	1.00[EUR][1000 genomes]
rs7754686	1.00[EUR][1000 genomes]
rs7758523	1.00[EUR][1000 genomes]
rs7759659	1.00[EUR][1000 genomes]
rs7762969	1.00[EUR][1000 genomes]
rs9918448	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv522088	chr6:113788356-113809585	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113801200-113810200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:113803200-113807200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:113803200-113807200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr6:113803200-113807200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:113804000-113804400	Enhancers	HepG2	liver

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