Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113752685..113754255-chr6:113760032..113762327,2	MCF-7	breast:
2	chr6:113753134..113757391-chr6:113759557..113761652,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232316	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10484456	1.00[EUR][1000 genomes]
rs10484460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2068614	1.00[EUR][1000 genomes]
rs2068615	1.00[EUR][1000 genomes]
rs55715533	1.00[EUR][1000 genomes]
rs55812012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56098259	1.00[EUR][1000 genomes]
rs57194334	1.00[AMR][1000 genomes]
rs57950622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60729491	1.00[AMR][1000 genomes]
rs73539771	1.00[EUR][1000 genomes]
rs73765209	1.00[EUR][1000 genomes]
rs73765210	1.00[EUR][1000 genomes]
rs73765212	1.00[EUR][1000 genomes]
rs73765216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73765218	1.00[AMR][1000 genomes]
rs7740950	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488173	1.00[EUR][1000 genomes]
rs9488201	1.00[EUR][1000 genomes]
rs9918448	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1018357	chr6:113748468-113781070	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv518991	chr6:113760526-113799618	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113755800-113767800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr6:113756200-113762800	Weak transcription	A549	lung

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