Variant report

Variant	rs56098259
Chromosome Location	chr6:113797045-113797046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10484456	1.00[EUR][1000 genomes]
rs10484460	1.00[EUR][1000 genomes]
rs17075154	1.00[EUR][1000 genomes]
rs17075210	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2068614	1.00[EUR][1000 genomes]
rs2068615	1.00[EUR][1000 genomes]
rs55715533	1.00[EUR][1000 genomes]
rs55812012	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57950622	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60729491	0.91[AFR][1000 genomes]
rs73539771	1.00[EUR][1000 genomes]
rs73765209	1.00[EUR][1000 genomes]
rs73765210	1.00[EUR][1000 genomes]
rs73765212	1.00[EUR][1000 genomes]
rs73765216	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7740950	1.00[EUR][1000 genomes]
rs9488173	1.00[EUR][1000 genomes]
rs9488201	1.00[EUR][1000 genomes]
rs9918448	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv518991	chr6:113760526-113799618	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv522088	chr6:113788356-113809585	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113792000-113797600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:113792400-113797800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:113796400-113799200	Enhancers	Adipose Nuclei	Adipose
4	chr6:113796600-113797200	Enhancers	Pancreas	Pancrea
5	chr6:113796600-113798200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:113796800-113797200	Enhancers	Esophagus	oesophagus
7	chr6:113796800-113797200	Enhancers	HepG2	liver
8	chr6:113796800-113798800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:113797000-113798800	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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