Variant report

Variant	rs60729491
Chromosome Location	chr6:113802604-113802605
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10484460	1.00[AMR][1000 genomes]
rs17075154	1.00[AMR][1000 genomes]
rs17075210	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55812012	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56098259	0.91[AFR][1000 genomes]
rs57194334	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57950622	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765216	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765218	1.00[AMR][1000 genomes]
rs7740950	1.00[AMR][1000 genomes]
rs9918448	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv522088	chr6:113788356-113809585	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113800800-113802800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:113800800-113802800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:113801200-113810200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:113801600-113803000	Enhancers	NHDF-Ad	bronchial
5	chr6:113802400-113803200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:113802400-113803200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr6:113802400-113803200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:113802400-113803200	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr6:113802600-113802800	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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