Variant report

Variant	rs9488173
Chromosome Location	chr6:113732760-113732761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113732055..113735601-chr6:114178607..114183451,4	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10484456	1.00[EUR][1000 genomes]
rs10484460	1.00[EUR][1000 genomes]
rs17075154	1.00[EUR][1000 genomes]
rs17075210	1.00[EUR][1000 genomes]
rs2068614	1.00[EUR][1000 genomes]
rs2068615	1.00[EUR][1000 genomes]
rs55715533	1.00[EUR][1000 genomes]
rs55812012	1.00[EUR][1000 genomes]
rs56098259	1.00[EUR][1000 genomes]
rs57950622	1.00[EUR][1000 genomes]
rs73539771	1.00[EUR][1000 genomes]
rs73765209	1.00[EUR][1000 genomes]
rs73765210	1.00[EUR][1000 genomes]
rs73765212	1.00[EUR][1000 genomes]
rs73765216	1.00[EUR][1000 genomes]
rs7740950	1.00[EUR][1000 genomes]
rs9488201	1.00[EUR][1000 genomes]
rs9918448	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113726200-113736800	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:113727800-113733600	Weak transcription	Fetal Kidney	kidney
3	chr6:113727800-113733800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:113730600-113732800	Enhancers	NHDF-Ad	bronchial
5	chr6:113731000-113732800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:113731000-113732800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:113731000-113733000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:113731200-113732800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:113731200-113737200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:113731600-113733000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr6:113731600-113735000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:113731600-113736200	Enhancers	A549	lung
13	chr6:113731800-113733800	Weak transcription	Osteobl	bone
14	chr6:113731800-113734000	Weak transcription	Stomach Mucosa	stomach
15	chr6:113732400-113732800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:113732400-113733800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:113732400-113734000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:113732400-113734000	Weak transcription	NHLF	lung
19	chr6:113732600-113733600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr6:113732600-113733800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:113732600-113733800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:113732600-113733800	Weak transcription	HSMM	muscle
23	chr6:113732600-113733800	Weak transcription	NHEK	skin
24	chr6:113732600-113735400	Weak transcription	HMEC	breast

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