Variant report

Variant	rs2068614
Chromosome Location	chr6:113781545-113781546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10484456	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10484460	1.00[EUR][1000 genomes]
rs17075154	1.00[EUR][1000 genomes]
rs17075210	1.00[EUR][1000 genomes]
rs2068615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55715533	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55812012	1.00[EUR][1000 genomes]
rs56098259	1.00[EUR][1000 genomes]
rs57950622	1.00[EUR][1000 genomes]
rs73539771	1.00[EUR][1000 genomes]
rs73765209	1.00[EUR][1000 genomes]
rs73765210	1.00[EUR][1000 genomes]
rs73765212	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73765216	1.00[EUR][1000 genomes]
rs7740950	1.00[EUR][1000 genomes]
rs9481367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9488173	1.00[EUR][1000 genomes]
rs9488194	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9488201	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9918448	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv518991	chr6:113760526-113799618	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113771600-113782400	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:113772400-113785800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:113777200-113785600	Weak transcription	A549	lung
4	chr6:113778200-113782400	Weak transcription	NHEK	skin
5	chr6:113780000-113781800	Weak transcription	Placenta	Placenta
6	chr6:113780000-113781800	Weak transcription	NHDF-Ad	bronchial
7	chr6:113780000-113782000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:113780000-113782200	Weak transcription	Osteobl	bone
9	chr6:113780000-113782800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:113780000-113785400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:113780000-113785400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:113780000-113785400	Weak transcription	NHLF	lung
13	chr6:113780200-113782400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:113780200-113782600	Weak transcription	Fetal Lung	lung
15	chr6:113780200-113785000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:113780200-113785400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:113780400-113785400	Weak transcription	HUVEC	blood vessel
18	chr6:113780400-113785600	Weak transcription	NH-A	brain
19	chr6:113780400-113785800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:113780600-113785800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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