Variant report

Variant	rs73765261
Chromosome Location	chr6:113852206-113852207
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BHLHE40	chr6:113852021-113852297	HepG2	liver:	n/a	n/a
2	NR2F2	chr6:113851952-113852369	MCF-7	breast:	n/a	n/a
3	FOSL2	chr6:113852014-113852397	HepG2	liver:	n/a	chr6:113852185-113852196 chr6:113852186-113852195 chr6:113852184-113852196
4	MAX	chr6:113852065-113852329	NB4	blood:	n/a	chr6:113852159-113852169 chr6:113852253-113852262
5	GATA3	chr6:113851943-113852380	MCF-7	breast:	n/a	chr6:113852184-113852193
6	ARID3A	chr6:113852008-113852231	HepG2	liver:	n/a	n/a
7	MAX	chr6:113851932-113852340	SK-N-SH	brain:	n/a	chr6:113852159-113852169 chr6:113852253-113852262
8	JUND	chr6:113852009-113852353	HepG2	liver:	n/a	chr6:113852186-113852195 chr6:113852184-113852196 chr6:113852184-113852195
9	CHD1	chr6:113852206-113852260	H1-hESC	embryonic stem cell:	n/a	n/a
10	MAFF	chr6:113852079-113852216	HepG2	liver:	n/a	n/a
11	MYC	chr6:113851858-113852409	MCF10A-Er-Src	breast:	n/a	chr6:113852159-113852169 chr6:113852253-113852262
12	MYC	chr6:113852059-113852220	MCF-7	breast:	n/a	chr6:113852159-113852169
13	STAT3	chr6:113852085-113852316	MCF10A-Er-Src	breast:	n/a	n/a
14	CHD2	chr6:113852187-113852252	HepG2	liver:	n/a	n/a
15	FOS	chr6:113851949-113852417	MCF10A-Er-Src	breast:	n/a	chr6:113852186-113852195 chr6:113852184-113852196 chr6:113852184-113852195
16	MXI1	chr6:113852021-113852268	HepG2	liver:	n/a	n/a
17	MAX	chr6:113851895-113852395	MCF-7	breast:	n/a	chr6:113852159-113852169 chr6:113852253-113852262
18	YY1	chr6:113852151-113852360	K562	blood:	n/a	n/a
19	MYC	chr6:113852011-113852301	MCF-7	breast:	n/a	chr6:113852159-113852169 chr6:113852253-113852262
20	MAX	chr6:113852026-113852308	SK-N-SH	brain:	n/a	chr6:113852159-113852169 chr6:113852253-113852262
21	NR2F2	chr6:113851958-113852336	MCF-7	breast:	n/a	n/a
22	CEBPB	chr6:113852071-113852292	HepG2	liver:	n/a	n/a
23	GATA3	chr6:113851738-113852446	MCF-7	breast:	n/a	chr6:113852184-113852193
24	E2F6	chr6:113851979-113852411	H1-hESC	embryonic stem cell:	n/a	n/a
25	MXI1	chr6:113851919-113852430	IMR90	lung:	n/a	n/a
26	E2F4	chr6:113852112-113852312	MCF10A-Er-Src	breast:	n/a	n/a
27	FOS	chr6:113852000-113852424	MCF10A-Er-Src	breast:	n/a	chr6:113852186-113852195 chr6:113852184-113852196 chr6:113852184-113852195
28	SMC3	chr6:113852044-113852255	HepG2	liver:	n/a	n/a
29	FOS	chr6:113852008-113852313	HUVEC	blood vessel:	n/a	chr6:113852186-113852195 chr6:113852184-113852196 chr6:113852184-113852195
30	MAX	chr6:113851941-113852366	H1-hESC	embryonic stem cell:	n/a	chr6:113852159-113852169 chr6:113852253-113852262
31	FOSL2	chr6:113851957-113852372	HepG2	liver:	n/a	chr6:113852185-113852196 chr6:113852186-113852195 chr6:113852184-113852196
32	FOSL2	chr6:113851950-113852313	SK-N-SH	brain:	n/a	chr6:113852185-113852196 chr6:113852186-113852195 chr6:113852184-113852196
33	MYC	chr6:113851850-113852413	MCF10A-Er-Src	breast:	n/a	chr6:113852159-113852169 chr6:113852253-113852262
34	SIN3AK20	chr6:113851873-113852441	MCF-7	breast:	n/a	n/a
35	FOSL2	chr6:113851919-113852315	A549	lung:	n/a	chr6:113852185-113852196 chr6:113852186-113852195 chr6:113852184-113852196
36	CEBPB	chr6:113852010-113852337	IMR90	lung:	n/a	n/a
37	POLR2A	chr6:113852045-113852255	MCF10A-Er-Src	breast:	n/a	n/a
38	MAX	chr6:113851831-113852349	MCF-7	breast:	n/a	chr6:113852159-113852169 chr6:113852253-113852262
39	MYC	chr6:113851985-113852329	K562	blood:	n/a	chr6:113852159-113852169 chr6:113852253-113852262
40	FOSL2	chr6:113851915-113852400	MCF-7	breast:	n/a	chr6:113852185-113852196 chr6:113852186-113852195 chr6:113852184-113852196
41	JUND	chr6:113851995-113852280	HepG2	liver:	n/a	chr6:113852186-113852195 chr6:113852184-113852196 chr6:113852184-113852195
42	FOS	chr6:113851956-113852384	MCF10A-Er-Src	breast:	n/a	chr6:113852186-113852195 chr6:113852184-113852196 chr6:113852184-113852195
43	MAX	chr6:113852029-113852314	K562	blood:	n/a	chr6:113852159-113852169 chr6:113852253-113852262
44	POLR2A	chr6:113852095-113852350	MCF-7	breast:	n/a	n/a
45	HNF4A	chr6:113851999-113852250	HepG2	liver:	n/a	n/a
46	YY1	chr6:113851951-113852560	H1-hESC	embryonic stem cell:	n/a	n/a
47	STAT3	chr6:113852076-113852306	MCF10A-Er-Src	breast:	n/a	n/a
48	MYBL2	chr6:113851839-113852322	HepG2	liver:	n/a	n/a
49	HDAC2	chr6:113851970-113852367	MCF-7	breast:	n/a	n/a
50	JUN	chr6:113852065-113852292	HepG2	liver:	n/a	chr6:113852186-113852195 chr6:113852184-113852196

Variant related genes	Relation type
ENSG00000236347	TF binding region

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1481432	1.00[EUR][1000 genomes]
rs1585973	1.00[EUR][1000 genomes]
rs1600767	1.00[EUR][1000 genomes]
rs17075218	1.00[EUR][1000 genomes]
rs17075221	1.00[EUR][1000 genomes]
rs1904994	1.00[EUR][1000 genomes]
rs1982686	1.00[EUR][1000 genomes]
rs2493884	1.00[EUR][1000 genomes]
rs2493885	1.00[EUR][1000 genomes]
rs2493891	1.00[EUR][1000 genomes]
rs3963300	1.00[EUR][1000 genomes]
rs4337960	1.00[EUR][1000 genomes]
rs531979	1.00[EUR][1000 genomes]
rs547797	1.00[EUR][1000 genomes]
rs549875	1.00[EUR][1000 genomes]
rs56303196	1.00[EUR][1000 genomes]
rs57194334	1.00[EUR][1000 genomes]
rs58875635	1.00[EUR][1000 genomes]
rs58891033	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59844934	1.00[EUR][1000 genomes]
rs59950054	1.00[EUR][1000 genomes]
rs60295562	1.00[EUR][1000 genomes]
rs60504130	1.00[EUR][1000 genomes]
rs61320559	1.00[EUR][1000 genomes]
rs6913809	1.00[EUR][1000 genomes]
rs6926011	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6942149	1.00[EUR][1000 genomes]
rs73531703	1.00[EUR][1000 genomes]
rs73547891	1.00[EUR][1000 genomes]
rs73765224	1.00[EUR][1000 genomes]
rs73765225	1.00[EUR][1000 genomes]
rs73765247	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73765256	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73765266	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73765267	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73765271	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73765272	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73765273	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73765283	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7745709	1.00[EUR][1000 genomes]
rs7749447	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7752840	1.00[EUR][1000 genomes]
rs7753869	1.00[EUR][1000 genomes]
rs7754686	1.00[EUR][1000 genomes]
rs7758523	1.00[EUR][1000 genomes]
rs7759659	1.00[EUR][1000 genomes]
rs7762969	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv981078	chr6:113851437-113874497	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113849600-113852400	Enhancers	HMEC	breast
2	chr6:113850200-113852400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:113850200-113852400	Enhancers	NHDF-Ad	bronchial
4	chr6:113850200-113852600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:113851400-113852800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:113851800-113852400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:113852000-113852400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr6:113852000-113852400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr6:113852000-113852400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:113852000-113852400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:113852000-113852400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:113852000-113852400	Enhancers	HepG2	liver
13	chr6:113852000-113852400	Enhancers	NH-A	brain
14	chr6:113852000-113852400	Enhancers	Osteobl	bone
15	chr6:113852000-113852600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:113852200-113852600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:113852200-113852800	Active TSS	HUES6 Cell Line	embryonic stem cell

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