Variant report

Variant	rs61734440
Chromosome Location	chr6:113902767-113902768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1481432	0.94[ASN][1000 genomes]
rs1585973	0.94[ASN][1000 genomes]
rs1600767	0.94[ASN][1000 genomes]
rs17075218	0.82[ASN][1000 genomes]
rs17075221	0.82[ASN][1000 genomes]
rs1904994	0.94[ASN][1000 genomes]
rs1982686	0.94[ASN][1000 genomes]
rs2493884	0.82[ASN][1000 genomes]
rs2493891	0.94[ASN][1000 genomes]
rs3963300	0.94[ASN][1000 genomes]
rs531979	0.94[ASN][1000 genomes]
rs547797	0.94[ASN][1000 genomes]
rs549875	0.94[ASN][1000 genomes]
rs56303196	0.82[ASN][1000 genomes]
rs58875635	0.94[ASN][1000 genomes]
rs59950054	0.82[ASN][1000 genomes]
rs61320559	0.94[ASN][1000 genomes]
rs6913809	0.94[ASN][1000 genomes]
rs6935853	0.94[ASN][1000 genomes]
rs6942149	0.94[ASN][1000 genomes]
rs73531703	0.94[ASN][1000 genomes]
rs73531704	0.94[ASN][1000 genomes]
rs73531705	0.94[ASN][1000 genomes]
rs73531708	0.94[ASN][1000 genomes]
rs73531717	0.94[ASN][1000 genomes]
rs73547807	0.82[ASN][1000 genomes]
rs73547876	0.82[ASN][1000 genomes]
rs73547891	0.82[ASN][1000 genomes]
rs73549618	0.94[ASN][1000 genomes]
rs73549630	0.94[ASN][1000 genomes]
rs73549634	0.94[ASN][1000 genomes]
rs73549650	0.94[ASN][1000 genomes]
rs73549652	0.83[ASN][1000 genomes]
rs73549655	0.94[ASN][1000 genomes]
rs73765222	0.82[ASN][1000 genomes]
rs73765232	0.82[ASN][1000 genomes]
rs73765248	0.94[ASN][1000 genomes]
rs7745709	0.82[ASN][1000 genomes]
rs7753356	0.82[ASN][1000 genomes]
rs7753869	0.82[ASN][1000 genomes]
rs7754686	0.82[ASN][1000 genomes]
rs7758523	0.82[ASN][1000 genomes]
rs7759659	0.94[ASN][1000 genomes]
rs7762969	0.94[ASN][1000 genomes]
rs9488216	1.00[AMR][1000 genomes]
rs9488218	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv3443942	chr6:113902575-113902847	Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
3	nsv965755	chr6:113902674-113903275	Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113900800-113903600	Weak transcription	Rectal Smooth Muscle	rectum

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