Variant report

Variant	rs12202351
Chromosome Location	chr6:114016321-114016322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114009414..114019168-chr6:114176401..114180605,12	MCF-7	breast:
2	chr6:114007989..114010081-chr6:114014457..114016376,2	K562	blood:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11153433	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153434	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110676	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12111295	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[CHD][hapmap];0.96[GIH][hapmap];0.89[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12191218	0.82[YRI][hapmap]
rs17183605	0.87[GIH][hapmap];0.81[MEX][hapmap];0.89[MKK][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17787923	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34966615	0.85[EUR][1000 genomes]
rs34991955	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6568804	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6936534	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs773683	0.84[CEU][hapmap];0.88[EUR][1000 genomes]
rs773684	0.84[CEU][hapmap];0.87[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.90[EUR][1000 genomes]
rs7761143	0.89[YRI][hapmap]
rs7767752	0.89[YRI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12202351	RFPL4B	cis	cerebellum	SCAN
rs12202351	FAM26F	cis	parietal	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114012800-114016600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:114014400-114016400	Enhancers	Hela-S3	cervix
3	chr6:114014400-114020200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:114014800-114016400	Enhancers	A549	lung
5	chr6:114014800-114016800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:114015000-114020200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:114015200-114017000	Enhancers	NH-A	brain
8	chr6:114015200-114017600	Enhancers	HepG2	liver
9	chr6:114015400-114016400	Enhancers	NHLF	lung
10	chr6:114015400-114017000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:114015400-114017600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:114015400-114020200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:114015400-114020200	Enhancers	Osteobl	bone
14	chr6:114015600-114016400	Enhancers	HSMM	muscle
15	chr6:114015600-114018400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:114015800-114016400	Enhancers	Stomach Mucosa	stomach
17	chr6:114015800-114019000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:114015800-114023000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr6:114016000-114016400	Enhancers	HSMMtube	muscle
20	chr6:114016000-114018600	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr6:114016000-114020000	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr6:114016200-114016600	Enhancers	NHDF-Ad	bronchial
23	chr6:114016200-114018200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:114016200-114018200	Weak transcription	NHEK	skin
25	chr6:114016200-114018400	Weak transcription	HMEC	breast
26	chr6:114016200-114018600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:114016200-114018600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr6:114016200-114018600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:114016200-114019000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr6:114016200-114023000	Weak transcription	Fetal Lung	lung

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