Variant report

Variant	rs17787923
Chromosome Location	chr6:114019192-114019193
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114017203..114020038-chr6:114083854..114086336,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11153433	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11153434	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12110676	0.85[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12111295	0.85[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12202351	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17183605	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34966615	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34991955	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6568804	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6936534	0.91[EUR][1000 genomes]
rs773683	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs773684	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9488241	0.85[EUR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114014400-114020200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:114015000-114020200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:114015400-114020200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:114015400-114020200	Enhancers	Osteobl	bone
5	chr6:114015800-114023000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:114016000-114020000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:114016200-114023000	Weak transcription	Fetal Lung	lung
8	chr6:114016400-114019400	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr6:114016400-114022000	Weak transcription	Stomach Mucosa	stomach
10	chr6:114017000-114020200	Enhancers	NHDF-Ad	bronchial
11	chr6:114017400-114019800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:114017600-114020000	Weak transcription	HepG2	liver
13	chr6:114018000-114019800	Enhancers	NH-A	brain
14	chr6:114018200-114019600	Enhancers	NHEK	skin
15	chr6:114018200-114020200	Enhancers	HSMM	muscle
16	chr6:114018400-114019400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:114018400-114019800	Enhancers	HMEC	breast
18	chr6:114018600-114019200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:114018600-114019400	Enhancers	A549	lung
20	chr6:114018600-114019600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:114018600-114019800	Enhancers	Muscle Satellite Cultured Cells	--
22	chr6:114018600-114020200	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr6:114018600-114020200	Enhancers	NHLF	lung
24	chr6:114018800-114019200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:114018800-114019400	Enhancers	Primary hematopoietic stem cells	blood
26	chr6:114018800-114019400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:114018800-114020200	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr6:114018800-114020800	Enhancers	HSMMtube	muscle
29	chr6:114019000-114019200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:114019000-114019200	Flanking Active TSS	GM12878-XiMat	blood
31	chr6:114019000-114019200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr6:114019000-114019600	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr6:114019000-114019600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:114019000-114020200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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