Variant report

Variant	rs11153434
Chromosome Location	chr6:114016683-114016684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114009414..114019168-chr6:114176401..114180605,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11153433	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110676	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12111295	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12202351	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17183605	0.92[GIH][hapmap];0.81[MEX][hapmap];0.89[MKK][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17787923	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34966615	0.86[EUR][1000 genomes]
rs34991955	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6568804	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6936534	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs773683	0.84[CEU][hapmap];0.89[EUR][1000 genomes]
rs773684	0.84[CEU][hapmap];0.92[GIH][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11153434	FAM26F	cis	parietal	SCAN
rs11153434	RFPL4B	cis	cerebellum	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114014400-114020200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:114014800-114016800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:114015000-114020200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:114015200-114017000	Enhancers	NH-A	brain
5	chr6:114015200-114017600	Enhancers	HepG2	liver
6	chr6:114015400-114017000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:114015400-114017600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:114015400-114020200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:114015400-114020200	Enhancers	Osteobl	bone
10	chr6:114015600-114018400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:114015800-114019000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:114015800-114023000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:114016000-114018600	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr6:114016000-114020000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:114016200-114018200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:114016200-114018200	Weak transcription	NHEK	skin
17	chr6:114016200-114018400	Weak transcription	HMEC	breast
18	chr6:114016200-114018600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:114016200-114018600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr6:114016200-114018600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:114016200-114019000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr6:114016200-114023000	Weak transcription	Fetal Lung	lung
23	chr6:114016400-114018000	Weak transcription	A549	lung
24	chr6:114016400-114018200	Weak transcription	HSMM	muscle
25	chr6:114016400-114018600	Weak transcription	NHLF	lung
26	chr6:114016400-114018800	Weak transcription	HSMMtube	muscle
27	chr6:114016400-114019400	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr6:114016400-114022000	Weak transcription	Stomach Mucosa	stomach
29	chr6:114016600-114017000	Weak transcription	NHDF-Ad	bronchial

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