Variant report

Variant	rs773684
Chromosome Location	chr6:114021321-114021322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11153433	0.90[EUR][1000 genomes]
rs11153434	0.84[CEU][hapmap];0.92[GIH][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes]
rs12110676	0.83[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs12111295	0.84[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap];0.92[EUR][1000 genomes]
rs12202351	0.84[CEU][hapmap];0.87[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.90[EUR][1000 genomes]
rs17183605	0.94[CEU][hapmap];0.86[CHD][hapmap];0.92[GIH][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17787923	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17788436	0.84[ASN][1000 genomes]
rs34966615	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34991955	0.92[EUR][1000 genomes]
rs35711891	0.92[ASN][1000 genomes]
rs6568804	0.92[EUR][1000 genomes]
rs6936534	0.90[EUR][1000 genomes]
rs773683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488241	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981079	chr6:114021110-114039103	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114015800-114023000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr6:114016200-114023000	Weak transcription	Fetal Lung	lung
3	chr6:114016400-114022000	Weak transcription	Stomach Mucosa	stomach
4	chr6:114021200-114023000	Weak transcription	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links