Variant report

Variant	rs17788436
Chromosome Location	chr6:114029085-114029086
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs34966615	0.84[ASN][1000 genomes]
rs352081	0.82[JPT][hapmap]
rs35711891	0.91[ASN][1000 genomes]
rs66812545	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6930505	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72954686	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs773683	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs773684	0.92[CHB][hapmap];0.84[ASN][1000 genomes]
rs9488241	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981079	chr6:114021110-114039103	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114024000-114029800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr6:114028400-114029200	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr6:114028800-114032200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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