Variant report

Variant	rs9488241
Chromosome Location	chr6:114027059-114027060
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12111295	0.82[MEX][hapmap]
rs17183605	0.81[MEX][hapmap];0.84[EUR][1000 genomes]
rs17787923	0.85[EUR][1000 genomes]
rs17788436	0.98[ASN][1000 genomes]
rs34966615	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs352081	0.82[JPT][hapmap]
rs352082	0.82[JPT][hapmap]
rs352084	0.82[JPT][hapmap]
rs35711891	0.93[ASN][1000 genomes]
rs6930505	0.93[ASN][1000 genomes]
rs72954686	0.93[ASN][1000 genomes]
rs773683	0.91[CHB][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs773684	0.92[CHB][hapmap];0.87[CHD][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981079	chr6:114021110-114039103	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9488241	FAM26F	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114024000-114029800	Weak transcription	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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