Variant report

Variant	rs6936534
Chromosome Location	chr6:114015304-114015305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:113997942..114000712-chr6:114013887..114015461,2	MCF-7	breast:
2	chr6:114009414..114019168-chr6:114176401..114180605,12	MCF-7	breast:
3	chr6:114007989..114010081-chr6:114014457..114016376,2	K562	blood:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11153433	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11153434	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12110676	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12111295	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12202351	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17183605	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17787923	0.91[EUR][1000 genomes]
rs34966615	0.85[EUR][1000 genomes]
rs34991955	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6568804	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs773683	0.88[EUR][1000 genomes]
rs773684	0.90[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114006000-114015600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:114012000-114015400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:114012400-114015400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:114012400-114015400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:114012400-114016000	Weak transcription	HSMMtube	muscle
6	chr6:114012800-114015400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:114012800-114015400	Weak transcription	Osteobl	bone
8	chr6:114012800-114015600	Weak transcription	HSMM	muscle
9	chr6:114012800-114016600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:114014400-114016400	Enhancers	Hela-S3	cervix
11	chr6:114014400-114020200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:114014800-114015400	Enhancers	Stomach Mucosa	stomach
13	chr6:114014800-114015600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:114014800-114015600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:114014800-114015800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:114014800-114015800	Enhancers	NHDF-Ad	bronchial
17	chr6:114014800-114016200	Enhancers	NHEK	skin
18	chr6:114014800-114016400	Enhancers	A549	lung
19	chr6:114014800-114016800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:114015000-114015400	Weak transcription	NHLF	lung
21	chr6:114015000-114015600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:114015000-114016200	Enhancers	HMEC	breast
23	chr6:114015000-114020200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:114015200-114017000	Enhancers	NH-A	brain
25	chr6:114015200-114017600	Enhancers	HepG2	liver

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