Variant report

Variant	rs12191218
Chromosome Location	chr6:114013586-114013587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114009414..114019168-chr6:114176401..114180605,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1080429	1.00[ASN][1000 genomes]
rs11153430	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153431	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190203	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191966	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12200427	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200934	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12200957	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12202351	0.82[YRI][hapmap]
rs12203628	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204123	0.81[AMR][1000 genomes]
rs12209179	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213207	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075401	1.00[ASN][1000 genomes]
rs1899787	1.00[ASN][1000 genomes]
rs2588020	1.00[ASN][1000 genomes]
rs2588022	1.00[ASN][1000 genomes]
rs2588024	1.00[ASN][1000 genomes]
rs2588027	1.00[ASN][1000 genomes]
rs2588029	1.00[ASN][1000 genomes]
rs2695455	1.00[ASN][1000 genomes]
rs2695459	1.00[ASN][1000 genomes]
rs4615422	1.00[ASN][1000 genomes]
rs58433452	1.00[ASN][1000 genomes]
rs59483308	1.00[ASN][1000 genomes]
rs60437986	1.00[ASN][1000 genomes]
rs62415964	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415965	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415966	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415969	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415970	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415974	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416008	1.00[ASN][1000 genomes]
rs7741192	1.00[ASN][1000 genomes]
rs7761143	0.91[CEU][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767752	1.00[CEU][hapmap];0.83[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384880	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9387166	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400659	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488242	1.00[ASN][1000 genomes]
rs9488243	1.00[ASN][1000 genomes]
rs9488246	1.00[ASN][1000 genomes]
rs9968962	1.00[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114006000-114014800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:114006000-114015600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:114008400-114015200	Weak transcription	HepG2	liver
4	chr6:114010200-114015000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:114011600-114014400	Weak transcription	Pancreas	Pancrea
6	chr6:114011800-114014800	Weak transcription	Stomach Mucosa	stomach
7	chr6:114012000-114015400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:114012200-114014400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:114012400-114014800	Weak transcription	NHLF	lung
10	chr6:114012400-114015400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:114012400-114015400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:114012400-114016000	Weak transcription	HSMMtube	muscle
13	chr6:114012600-114014400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:114012800-114014400	Weak transcription	Hela-S3	cervix
15	chr6:114012800-114014800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:114012800-114014800	Weak transcription	A549	lung
17	chr6:114012800-114014800	Weak transcription	NHDF-Ad	bronchial
18	chr6:114012800-114015400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:114012800-114015400	Weak transcription	Osteobl	bone
20	chr6:114012800-114015600	Weak transcription	HSMM	muscle
21	chr6:114012800-114016600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr6:114013000-114014800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:114013000-114014800	Weak transcription	NHEK	skin
24	chr6:114013000-114015000	Weak transcription	HMEC	breast

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