Variant report

Variant	rs2588020
Chromosome Location	chr6:114039800-114039801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1080429	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153430	1.00[ASN][1000 genomes]
rs11153431	1.00[ASN][1000 genomes]
rs12190203	1.00[ASN][1000 genomes]
rs12191218	1.00[ASN][1000 genomes]
rs12200427	1.00[ASN][1000 genomes]
rs12203628	1.00[ASN][1000 genomes]
rs12209179	1.00[ASN][1000 genomes]
rs12213207	1.00[ASN][1000 genomes]
rs1405756	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17075401	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1899787	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588022	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588024	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588027	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2695455	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2695457	0.80[EUR][1000 genomes]
rs2695458	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2695459	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4615422	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58433452	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59483308	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60437986	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415964	1.00[ASN][1000 genomes]
rs62415965	1.00[ASN][1000 genomes]
rs62415966	1.00[ASN][1000 genomes]
rs62415969	1.00[ASN][1000 genomes]
rs62415970	1.00[ASN][1000 genomes]
rs62415974	1.00[ASN][1000 genomes]
rs62416003	0.91[EUR][1000 genomes]
rs62416008	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741192	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761143	1.00[ASN][1000 genomes]
rs7762929	0.89[EUR][1000 genomes]
rs7767752	1.00[ASN][1000 genomes]
rs9384880	1.00[ASN][1000 genomes]
rs9387166	1.00[ASN][1000 genomes]
rs9400659	1.00[ASN][1000 genomes]
rs9488242	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488243	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488246	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9968962	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114030200-114040000	Weak transcription	Stomach Mucosa	stomach
2	chr6:114035200-114040200	Weak transcription	HepG2	liver
3	chr6:114037000-114040400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:114039600-114040000	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr6:114039600-114040000	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr6:114039600-114040200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr6:114039600-114040400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:114039600-114040400	Enhancers	Fetal Intestine Small	intestine
9	chr6:114039600-114040600	Enhancers	GM12878-XiMat	blood
10	chr6:114039600-114041200	Enhancers	HMEC	breast
11	chr6:114039800-114040200	Enhancers	Fetal Intestine Large	intestine
12	chr6:114039800-114041400	Enhancers	Hela-S3	cervix
13	chr6:114039800-114041400	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr6:114039800-114042000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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