Variant report

Variant	rs9400659
Chromosome Location	chr6:114003934-114003935
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1080429	1.00[ASN][1000 genomes]
rs11153430	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153431	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190203	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191218	1.00[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191966	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12200427	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200934	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12200957	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12201635	0.84[LWK][hapmap];0.83[MKK][hapmap];0.83[YRI][hapmap]
rs12202351	0.89[YRI][hapmap]
rs12203628	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204123	0.83[AMR][1000 genomes]
rs12209179	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213207	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075401	1.00[ASN][1000 genomes]
rs1899787	1.00[ASN][1000 genomes]
rs2588020	1.00[ASN][1000 genomes]
rs2588022	1.00[ASN][1000 genomes]
rs2588024	1.00[ASN][1000 genomes]
rs2588027	1.00[ASN][1000 genomes]
rs2588029	1.00[ASN][1000 genomes]
rs2695455	1.00[ASN][1000 genomes]
rs2695459	1.00[ASN][1000 genomes]
rs4615422	1.00[ASN][1000 genomes]
rs58433452	1.00[ASN][1000 genomes]
rs59483308	1.00[ASN][1000 genomes]
rs60437986	1.00[ASN][1000 genomes]
rs62415964	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415965	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415966	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415974	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416008	1.00[ASN][1000 genomes]
rs7741192	1.00[ASN][1000 genomes]
rs7761143	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767752	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384880	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9387166	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488242	1.00[ASN][1000 genomes]
rs9488243	1.00[ASN][1000 genomes]
rs9488246	1.00[ASN][1000 genomes]
rs9968962	1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9400659	OAT	trans	lymphoblastoid	seeQTL
rs9400659	FRK	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113996400-114004600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:113997400-114004200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:113997400-114005600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:113999000-114007000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:114002600-114004400	Weak transcription	HepG2	liver
6	chr6:114002800-114004000	Enhancers	Stomach Mucosa	stomach
7	chr6:114003000-114005600	Weak transcription	Primary B cells from peripheral blood	blood

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