Variant report

Variant	rs62416008
Chromosome Location	chr6:114055211-114055212
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114048463..114050659-chr6:114053494..114056179,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1080429	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153430	1.00[ASN][1000 genomes]
rs11153431	1.00[ASN][1000 genomes]
rs11969684	0.82[AMR][1000 genomes]
rs12110829	0.82[AMR][1000 genomes]
rs12111367	0.82[AMR][1000 genomes]
rs12190203	1.00[ASN][1000 genomes]
rs12191218	1.00[ASN][1000 genomes]
rs12200427	1.00[ASN][1000 genomes]
rs12203628	1.00[ASN][1000 genomes]
rs12209179	1.00[ASN][1000 genomes]
rs12213207	1.00[ASN][1000 genomes]
rs1405756	0.88[EUR][1000 genomes]
rs17075401	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1899787	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588020	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588022	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588024	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588027	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588029	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2695455	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2695459	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4615422	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58433452	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59483308	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60437986	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415964	1.00[ASN][1000 genomes]
rs62415965	1.00[ASN][1000 genomes]
rs62415966	1.00[ASN][1000 genomes]
rs62415969	1.00[ASN][1000 genomes]
rs62415970	1.00[ASN][1000 genomes]
rs62415974	1.00[ASN][1000 genomes]
rs62416003	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62416010	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62416033	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62416034	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62416035	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62416045	0.82[AMR][1000 genomes]
rs7741192	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761143	1.00[ASN][1000 genomes]
rs7762929	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7767752	1.00[ASN][1000 genomes]
rs9384880	1.00[ASN][1000 genomes]
rs9387166	1.00[ASN][1000 genomes]
rs9400659	1.00[ASN][1000 genomes]
rs9488242	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488243	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488246	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9968962	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114053600-114056200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:114054000-114056000	Weak transcription	Right Atrium	heart
3	chr6:114054000-114056200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:114054000-114063200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:114054200-114056000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:114054200-114056000	Weak transcription	Psoas Muscle	Psoas
7	chr6:114054200-114056000	Weak transcription	NH-A	brain
8	chr6:114054200-114056000	Weak transcription	Osteobl	bone
9	chr6:114054200-114056200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:114054200-114056200	Weak transcription	Stomach Mucosa	stomach
11	chr6:114054200-114058200	Weak transcription	HepG2	liver
12	chr6:114054400-114056000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr6:114054400-114056200	Weak transcription	Brain Anterior Caudate	brain
14	chr6:114054400-114056200	Weak transcription	HSMM	muscle
15	chr6:114054400-114056400	Weak transcription	HSMMtube	muscle
16	chr6:114054800-114056000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:114054800-114056000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:114054800-114056000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:114054800-114056000	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:114055000-114056000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:114055000-114056000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr6:114055000-114056000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:114055000-114056000	Weak transcription	NHDF-Ad	bronchial
24	chr6:114055200-114056000	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:114055200-114056200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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