Variant report

Variant	rs12110829
Chromosome Location	chr6:114080512-114080513
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114080493..114083851-chr6:114178361..114180752,3	MCF-7	breast:
2	chr6:114079000..114080556-chr6:114084506..114086465,2	K562	blood:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11969684	0.90[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12111367	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59162537	0.80[AMR][1000 genomes]
rs62416008	0.82[AMR][1000 genomes]
rs62416010	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62416033	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62416034	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62416035	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62416045	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6899377	0.84[AMR][1000 genomes]
rs7762929	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv464023	chr6:114071720-114114057	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv604532	chr6:114071720-114114057	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114077000-114085000	Weak transcription	Psoas Muscle	Psoas
2	chr6:114077600-114080800	Enhancers	GM12878-XiMat	blood
3	chr6:114077600-114083800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:114077600-114084600	Weak transcription	HSMM	muscle
5	chr6:114079200-114080600	Enhancers	Placenta	Placenta
6	chr6:114079200-114081400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr6:114079400-114080800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:114079600-114080600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr6:114079600-114080800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr6:114079600-114080800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:114079800-114080800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:114080000-114080600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:114080000-114080600	Enhancers	Fetal Lung	lung
14	chr6:114080000-114080600	Enhancers	HUVEC	blood vessel
15	chr6:114080000-114080800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr6:114080200-114080600	Enhancers	Primary B cells from peripheral blood	blood
17	chr6:114080200-114080600	Enhancers	Osteobl	bone
18	chr6:114080200-114080800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:114080400-114080800	Enhancers	Primary B cells from cord blood	blood
20	chr6:114080400-114080800	Enhancers	Primary hematopoietic stem cells	blood
21	chr6:114080400-114084200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:114080400-114085000	Weak transcription	A549	lung

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