Variant report

Variant	rs62416034
Chromosome Location	chr6:114063984-114063985
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11969684	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12110829	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12111367	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4615422	0.85[EUR][1000 genomes]
rs58433452	0.85[EUR][1000 genomes]
rs60437986	0.85[EUR][1000 genomes]
rs62416003	0.85[EUR][1000 genomes]
rs62416008	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62416010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62416033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62416035	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62416045	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7762929	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114062800-114064200	Enhancers	Fetal Heart	heart
2	chr6:114063200-114064000	Enhancers	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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