Variant report

Variant	rs9488246
Chromosome Location	chr6:114043413-114043414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1080429	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153430	1.00[ASN][1000 genomes]
rs11153431	1.00[ASN][1000 genomes]
rs12190203	1.00[ASN][1000 genomes]
rs12191218	1.00[ASN][1000 genomes]
rs12200427	1.00[ASN][1000 genomes]
rs12203628	1.00[ASN][1000 genomes]
rs12209179	1.00[ASN][1000 genomes]
rs12213207	1.00[ASN][1000 genomes]
rs1405756	0.95[EUR][1000 genomes]
rs17075401	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1899787	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588020	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588022	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588024	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588027	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588029	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2695455	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2695459	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4615422	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58433452	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59483308	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60437986	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415964	1.00[ASN][1000 genomes]
rs62415965	1.00[ASN][1000 genomes]
rs62415966	1.00[ASN][1000 genomes]
rs62415969	1.00[ASN][1000 genomes]
rs62415970	1.00[ASN][1000 genomes]
rs62415974	1.00[ASN][1000 genomes]
rs62416003	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62416008	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741192	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761143	1.00[ASN][1000 genomes]
rs7762929	0.92[EUR][1000 genomes]
rs7767752	1.00[ASN][1000 genomes]
rs9384880	1.00[ASN][1000 genomes]
rs9387166	1.00[ASN][1000 genomes]
rs9400659	1.00[ASN][1000 genomes]
rs9488242	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488243	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9968962	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114040200-114044400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr6:114040400-114044200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:114040400-114044400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:114040600-114044600	Weak transcription	HepG2	liver
5	chr6:114041200-114044200	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:114041200-114044400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr6:114041400-114044200	Weak transcription	Stomach Mucosa	stomach
8	chr6:114041400-114044400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:114041400-114044400	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr6:114042000-114044400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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