Variant report

Variant	rs7761143
Chromosome Location	chr6:114007818-114007819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114006826..114009081-chr6:114176815..114179468,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1080429	1.00[ASN][1000 genomes]
rs11153430	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153431	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191218	0.91[CEU][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12200427	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200934	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12200957	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12201635	0.81[LWK][hapmap];0.83[YRI][hapmap]
rs12202351	0.89[YRI][hapmap]
rs12203628	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204123	0.83[AMR][1000 genomes]
rs12209179	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213207	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075401	1.00[ASN][1000 genomes]
rs1899787	1.00[ASN][1000 genomes]
rs2588020	1.00[ASN][1000 genomes]
rs2588022	1.00[ASN][1000 genomes]
rs2588024	1.00[ASN][1000 genomes]
rs2588027	1.00[ASN][1000 genomes]
rs2588029	1.00[ASN][1000 genomes]
rs2695455	1.00[ASN][1000 genomes]
rs2695459	1.00[ASN][1000 genomes]
rs4615422	1.00[ASN][1000 genomes]
rs58433452	1.00[ASN][1000 genomes]
rs59483308	1.00[ASN][1000 genomes]
rs60437986	1.00[ASN][1000 genomes]
rs62415964	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415965	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415966	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415969	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415970	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415974	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416008	1.00[ASN][1000 genomes]
rs7741192	1.00[ASN][1000 genomes]
rs7767752	0.91[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9387166	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400659	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488242	1.00[ASN][1000 genomes]
rs9488243	1.00[ASN][1000 genomes]
rs9488246	1.00[ASN][1000 genomes]
rs9968962	1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7761143	OAT	trans	lymphoblastoid	seeQTL
rs7761143	FRK	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114004400-114008400	Enhancers	HepG2	liver
2	chr6:114006000-114011000	Weak transcription	HSMM	muscle
3	chr6:114006000-114014800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:114006000-114015600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:114006600-114011200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:114006600-114011400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:114006600-114011600	Weak transcription	HMEC	breast
8	chr6:114006600-114011600	Weak transcription	NHEK	skin
9	chr6:114007800-114008200	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr6:114007800-114009600	Weak transcription	Stomach Mucosa	stomach

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