Variant report

Variant	rs11153431
Chromosome Location	chr6:114002281-114002282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1080429	1.00[ASN][1000 genomes]
rs11153430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190203	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191218	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191966	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12200427	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200934	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12200957	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12203628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204123	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12205015	0.81[AFR][1000 genomes]
rs12209179	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213207	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075401	1.00[ASN][1000 genomes]
rs1899787	1.00[ASN][1000 genomes]
rs2588020	1.00[ASN][1000 genomes]
rs2588022	1.00[ASN][1000 genomes]
rs2588024	1.00[ASN][1000 genomes]
rs2588027	1.00[ASN][1000 genomes]
rs2588029	1.00[ASN][1000 genomes]
rs2695455	1.00[ASN][1000 genomes]
rs2695459	1.00[ASN][1000 genomes]
rs4615422	1.00[ASN][1000 genomes]
rs58433452	1.00[ASN][1000 genomes]
rs59483308	1.00[ASN][1000 genomes]
rs60437986	1.00[ASN][1000 genomes]
rs62415964	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415965	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415966	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415969	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415970	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415974	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416008	1.00[ASN][1000 genomes]
rs7741192	1.00[ASN][1000 genomes]
rs7761143	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767752	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384880	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9387166	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400659	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488242	1.00[ASN][1000 genomes]
rs9488243	1.00[ASN][1000 genomes]
rs9488246	1.00[ASN][1000 genomes]
rs9968962	1.00[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113996400-114004600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:113997400-114004200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:113997400-114005600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:113999000-114007000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:113999200-114002800	Weak transcription	Stomach Mucosa	stomach
6	chr6:114000400-114002600	Enhancers	HepG2	liver

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