Variant report

Variant	rs12205015
Chromosome Location	chr6:113984567-113984568
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11153430	0.81[AFR][1000 genomes]
rs11153431	0.81[AFR][1000 genomes]
rs12200427	0.86[AFR][1000 genomes]
rs12200934	0.89[AFR][1000 genomes]
rs12201635	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203628	0.81[AFR][1000 genomes]
rs12204123	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12209179	0.86[AFR][1000 genomes]
rs12213207	0.86[AFR][1000 genomes]
rs56313227	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60286805	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415964	0.82[AFR][1000 genomes]
rs62415965	0.86[AFR][1000 genomes]
rs62415966	0.86[AFR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113976000-113990800	Weak transcription	Psoas Muscle	Psoas
2	chr6:113982400-113993600	Weak transcription	Placenta	Placenta
3	chr6:113983000-113993800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:113983400-113984800	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:113983800-113984600	Enhancers	Primary B cells from cord blood	blood
6	chr6:113983800-113984600	Enhancers	Duodenum Mucosa	Duodenum
7	chr6:113983800-113984600	Flanking Active TSS	GM12878-XiMat	blood
8	chr6:113983800-113984600	Enhancers	HepG2	liver
9	chr6:113984000-113989800	Weak transcription	Adipose Nuclei	Adipose
10	chr6:113984200-113985000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr6:113984200-113993200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:113984400-113984600	Enhancers	Small Intestine	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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