Variant report

Variant	rs12213207
Chromosome Location	chr6:113997165-113997166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113993585..113995444-chr6:113995747..113998726,2	K562	blood:
2	chr6:113995421..113997174-chr6:114004271..114005989,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1080429	1.00[ASN][1000 genomes]
rs11153430	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153431	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190203	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191218	0.91[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191966	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12200427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200934	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12200957	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12201635	0.84[YRI][hapmap]
rs12202351	0.85[YRI][hapmap]
rs12203628	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204123	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12205015	0.86[AFR][1000 genomes]
rs12209179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075401	1.00[ASN][1000 genomes]
rs1899787	1.00[ASN][1000 genomes]
rs2588020	1.00[ASN][1000 genomes]
rs2588022	1.00[ASN][1000 genomes]
rs2588024	1.00[ASN][1000 genomes]
rs2588027	1.00[ASN][1000 genomes]
rs2588029	1.00[ASN][1000 genomes]
rs2695455	1.00[ASN][1000 genomes]
rs2695459	1.00[ASN][1000 genomes]
rs4615422	1.00[ASN][1000 genomes]
rs58433452	1.00[ASN][1000 genomes]
rs59483308	1.00[ASN][1000 genomes]
rs60286805	0.82[AFR][1000 genomes]
rs60437986	1.00[ASN][1000 genomes]
rs62415964	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415969	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415970	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415974	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416008	1.00[ASN][1000 genomes]
rs7741192	1.00[ASN][1000 genomes]
rs7761143	0.83[CEU][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767752	0.91[CEU][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384880	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9387166	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400659	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488242	1.00[ASN][1000 genomes]
rs9488243	1.00[ASN][1000 genomes]
rs9488246	1.00[ASN][1000 genomes]
rs9968962	1.00[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113990400-113997200	Weak transcription	Fetal Intestine Large	intestine
2	chr6:113993400-114000400	Weak transcription	Fetal Intestine Small	intestine
3	chr6:113994400-113998000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:113994400-113998200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:113994400-114001200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:113994400-114001600	Weak transcription	Gastric	stomach
7	chr6:113994800-113998200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:113994800-114001400	Weak transcription	Psoas Muscle	Psoas
9	chr6:113995000-113997200	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:113995000-113997800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:113996200-113997200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:113996200-113997200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:113996200-113997200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:113996200-113997200	Weak transcription	Pancreas	Pancrea
15	chr6:113996200-113997400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:113996400-114004600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr6:113996800-113999200	Enhancers	Stomach Mucosa	stomach
18	chr6:113997000-113997200	Enhancers	Colon Smooth Muscle	Colon
19	chr6:113997000-113997400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:113997000-113997600	Enhancers	HepG2	liver
21	chr6:113997000-113997800	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links