Variant report

Variant	rs2588024
Chromosome Location	chr6:114030590-114030591
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1080429	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153430	1.00[ASN][1000 genomes]
rs11153431	1.00[ASN][1000 genomes]
rs12190203	1.00[ASN][1000 genomes]
rs12191218	1.00[ASN][1000 genomes]
rs12200427	1.00[ASN][1000 genomes]
rs12203628	1.00[ASN][1000 genomes]
rs12209179	1.00[ASN][1000 genomes]
rs12213207	1.00[ASN][1000 genomes]
rs1405756	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075401	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1899787	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588020	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588022	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588027	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588029	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2695455	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2695458	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2695459	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4615422	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58433452	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59483308	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60437986	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415964	1.00[ASN][1000 genomes]
rs62415965	1.00[ASN][1000 genomes]
rs62415966	1.00[ASN][1000 genomes]
rs62415969	1.00[ASN][1000 genomes]
rs62415970	1.00[ASN][1000 genomes]
rs62415974	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416003	0.89[EUR][1000 genomes]
rs62416008	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741192	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761143	1.00[ASN][1000 genomes]
rs7762929	0.87[EUR][1000 genomes]
rs7767752	1.00[ASN][1000 genomes]
rs9384880	1.00[ASN][1000 genomes]
rs9387166	1.00[ASN][1000 genomes]
rs9400659	1.00[ASN][1000 genomes]
rs9488242	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488243	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488246	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9968962	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981079	chr6:114021110-114039103	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114028800-114032200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:114029200-114031400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:114029800-114031200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr6:114030200-114031400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:114030200-114040000	Weak transcription	Stomach Mucosa	stomach

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