Variant report

Variant	rs12198846
Chromosome Location	chr6:113690311-113690312
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12192120	1.00[ASN][1000 genomes]
rs12193394	1.00[ASN][1000 genomes]
rs67763055	1.00[ASN][1000 genomes]
rs72946727	1.00[ASN][1000 genomes]
rs72950866	1.00[ASN][1000 genomes]
rs7341325	1.00[ASN][1000 genomes]
rs7349894	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604518	chr6:113457727-113700723	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv830778	chr6:113662011-113729804	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113686600-113697200	Weak transcription	HSMMtube	muscle
2	chr6:113686800-113692000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:113686800-113693800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:113686800-113696800	Weak transcription	HSMM	muscle
5	chr6:113687000-113696000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:113687200-113695800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:113687200-113697000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:113688000-113697000	Weak transcription	NH-A	brain
9	chr6:113688400-113692800	Weak transcription	Osteobl	bone
10	chr6:113689200-113695400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:113689600-113692000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:113690000-113691400	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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