Variant report

Variant	rs11153462
Chromosome Location	chr6:114402339-114402340
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr6:114402338-114402605	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr6:114402306-114402632	MCF10A-Er-Src	breast:	n/a	n/a
3	STAT3	chr6:114402277-114402677	MCF10A-Er-Src	breast:	n/a	n/a
4	MAX	chr6:114402317-114402617	NB4	blood:	n/a	chr6:114402453-114402463
5	MYC	chr6:114402316-114402632	MCF10A-Er-Src	breast:	n/a	chr6:114402453-114402463
6	MYC	chr6:114402311-114402652	MCF10A-Er-Src	breast:	n/a	chr6:114402453-114402463
7	MYC	chr6:114402298-114402640	NB4	blood:	n/a	chr6:114402453-114402463
8	STAT3	chr6:114402311-114402632	MCF10A-Er-Src	breast:	n/a	n/a
9	STAT3	chr6:114402311-114402631	MCF10A-Er-Src	breast:	n/a	n/a
10	FOS	chr6:114402317-114402603	MCF10A-Er-Src	breast:	n/a	n/a
11	STAT3	chr6:114402123-114402652	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000228624	TF binding region

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10456889	0.88[ASN][1000 genomes]
rs11153457	0.88[ASN][1000 genomes]
rs11153463	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1154897	0.96[ASN][1000 genomes]
rs1154898	0.96[ASN][1000 genomes]
rs11752866	0.88[ASN][1000 genomes]
rs11752970	0.86[ASN][1000 genomes]
rs11756975	0.88[ASN][1000 genomes]
rs11966557	0.90[CHB][hapmap];0.88[ASN][1000 genomes]
rs12196433	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12199104	0.88[ASN][1000 genomes]
rs12205029	0.90[CHB][hapmap];0.88[ASN][1000 genomes]
rs12212081	0.88[ASN][1000 genomes]
rs12661982	0.91[ASN][1000 genomes]
rs12662029	0.91[ASN][1000 genomes]
rs13194478	0.93[ASN][1000 genomes]
rs13195526	0.90[CHB][hapmap];0.88[ASN][1000 genomes]
rs13199435	0.92[ASN][1000 genomes]
rs13201675	0.88[ASN][1000 genomes]
rs13203308	0.91[ASN][1000 genomes]
rs13203419	0.95[ASN][1000 genomes]
rs13210690	0.90[CHB][hapmap];0.91[ASN][1000 genomes]
rs13214829	0.92[ASN][1000 genomes]
rs1334901	0.90[CHB][hapmap];0.91[CHD][hapmap];0.91[ASN][1000 genomes]
rs1334902	0.90[CHB][hapmap];0.91[ASN][1000 genomes]
rs1519685	0.93[ASN][1000 genomes]
rs1519686	0.92[ASN][1000 genomes]
rs1519687	0.92[ASN][1000 genomes]
rs1519688	0.93[ASN][1000 genomes]
rs17075821	0.90[CHB][hapmap];0.91[CHD][hapmap];0.91[ASN][1000 genomes]
rs17075832	0.91[ASN][1000 genomes]
rs17075854	0.91[ASN][1000 genomes]
rs17189832	0.88[CEU][hapmap];0.90[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17190808	0.86[ASN][1000 genomes]
rs1879129	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1973731	0.95[ASN][1000 genomes]
rs2292945	0.93[ASN][1000 genomes]
rs34298844	0.93[ASN][1000 genomes]
rs35080884	0.88[ASN][1000 genomes]
rs35166510	0.88[ASN][1000 genomes]
rs35275613	0.88[ASN][1000 genomes]
rs35680201	0.96[ASN][1000 genomes]
rs35877583	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35944188	0.88[ASN][1000 genomes]
rs36013742	0.93[ASN][1000 genomes]
rs3897892	0.88[ASN][1000 genomes]
rs4311539	0.88[ASN][1000 genomes]
rs4371870	0.88[ASN][1000 genomes]
rs4463289	0.88[ASN][1000 genomes]
rs4604299	0.88[ASN][1000 genomes]
rs6568828	0.91[ASN][1000 genomes]
rs6904640	0.91[ASN][1000 genomes]
rs6916558	0.93[ASN][1000 genomes]
rs6919170	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924016	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6926298	0.90[CHB][hapmap];0.91[ASN][1000 genomes]
rs6940137	0.96[ASN][1000 genomes]
rs71566758	0.88[ASN][1000 genomes]
rs71566761	0.91[ASN][1000 genomes]
rs7739113	0.91[ASN][1000 genomes]
rs7739597	0.90[CHB][hapmap];0.83[GIH][hapmap];0.88[ASN][1000 genomes]
rs7742511	0.88[ASN][1000 genomes]
rs7744242	0.91[ASN][1000 genomes]
rs7762446	0.93[ASN][1000 genomes]
rs7772117	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772231	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs915202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114385600-114415800	Weak transcription	HSMM	muscle
2	chr6:114397600-114405600	Weak transcription	HSMMtube	muscle
3	chr6:114398400-114404400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:114398400-114408800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:114401800-114402400	Strong transcription	H1 Cell Line	embryonic stem cell
6	chr6:114402000-114402800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:114402000-114408400	Weak transcription	Brain Anterior Caudate	brain
8	chr6:114402200-114402400	Enhancers	NHDF-Ad	bronchial
9	chr6:114402200-114404400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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