Variant report

Variant	rs71566758
Chromosome Location	chr6:114340893-114340894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114340884..114342498-chr6:116573733..116576092,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HDAC2-5	chr6:114340785-114340904	NONHSAT114597

Variant related genes	Relation type
ENSG00000187189	Chromatin interaction
ENSG00000237021	Chromatin interaction
ENSG00000111817	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10456889	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153457	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153462	0.88[ASN][1000 genomes]
rs11153463	0.88[ASN][1000 genomes]
rs1154897	0.84[ASN][1000 genomes]
rs1154898	0.84[ASN][1000 genomes]
rs11752866	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752970	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11756975	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966557	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196433	0.97[ASN][1000 genomes]
rs12199104	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205029	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208567	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12212081	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661982	0.97[ASN][1000 genomes]
rs12662029	0.97[ASN][1000 genomes]
rs12665538	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12665551	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13194478	0.82[ASN][1000 genomes]
rs13195526	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13199435	0.81[ASN][1000 genomes]
rs13201675	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203308	0.97[ASN][1000 genomes]
rs13203419	0.83[ASN][1000 genomes]
rs13210690	0.97[ASN][1000 genomes]
rs13214829	0.81[ASN][1000 genomes]
rs1334901	0.97[ASN][1000 genomes]
rs1334902	0.97[ASN][1000 genomes]
rs1519685	0.82[ASN][1000 genomes]
rs1519686	0.80[ASN][1000 genomes]
rs1519687	0.80[ASN][1000 genomes]
rs1519688	0.82[ASN][1000 genomes]
rs17075821	0.97[ASN][1000 genomes]
rs17075832	0.97[ASN][1000 genomes]
rs17075854	0.97[ASN][1000 genomes]
rs17189832	0.97[ASN][1000 genomes]
rs1879129	0.82[ASN][1000 genomes]
rs1973731	0.83[ASN][1000 genomes]
rs2292945	0.82[ASN][1000 genomes]
rs34298844	0.82[ASN][1000 genomes]
rs35080884	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35166510	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35275613	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35680201	0.84[ASN][1000 genomes]
rs35877583	0.88[ASN][1000 genomes]
rs35944188	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36013742	0.82[ASN][1000 genomes]
rs3897892	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4311539	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4371870	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4463289	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4604299	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568828	0.97[ASN][1000 genomes]
rs6904640	0.97[ASN][1000 genomes]
rs6916558	0.82[ASN][1000 genomes]
rs6919170	0.88[ASN][1000 genomes]
rs6924016	0.87[ASN][1000 genomes]
rs6924680	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6926298	0.97[ASN][1000 genomes]
rs6940137	0.84[ASN][1000 genomes]
rs71566761	0.97[ASN][1000 genomes]
rs7739113	0.97[ASN][1000 genomes]
rs7739597	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742511	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744242	0.97[ASN][1000 genomes]
rs7750794	0.89[EUR][1000 genomes]
rs7750938	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7751120	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7754463	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7762446	0.82[ASN][1000 genomes]
rs7772117	0.88[ASN][1000 genomes]
rs7772231	0.82[ASN][1000 genomes]
rs915202	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114329200-114342200	Weak transcription	Brain Substantia Nigra	brain
2	chr6:114338600-114352200	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:114339800-114341400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:114339800-114342600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:114339800-114343600	Weak transcription	Stomach Mucosa	stomach
6	chr6:114339800-114345200	Weak transcription	HSMM	muscle
7	chr6:114340600-114341800	Strong transcription	HSMMtube	muscle

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