Variant report

Variant	rs7754463
Chromosome Location	chr6:114344570-114344571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10456889	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11153457	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11752866	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11752970	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11756975	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11966557	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12199104	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12205029	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12208567	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12212081	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13195526	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13201675	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35080884	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35166510	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35275613	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35944188	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3897892	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4311539	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4371870	0.83[ASN][1000 genomes]
rs4463289	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4604299	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs71566758	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7739597	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7742511	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114338600-114352200	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:114339800-114345200	Weak transcription	HSMM	muscle
3	chr6:114341800-114346400	Weak transcription	HSMMtube	muscle
4	chr6:114343600-114344800	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links