Variant report

Variant	rs11155241
Chromosome Location	chr6:142664439-142664440
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:142658449..142660640-chr6:142664170..142666775,2	K562	blood:
2	chr6:142662353..142664564-chr6:142664981..142667307,2	MCF-7	breast:
3	chr6:142658136..142659637-chr6:142663898..142665923,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10484733	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11155242	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11759653	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12189838	0.86[EUR][1000 genomes]
rs12190271	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12197866	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12213892	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13198644	0.86[EUR][1000 genomes]
rs1329705	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1329707	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17071756	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1928528	0.86[EUR][1000 genomes]
rs2294775	0.86[EUR][1000 genomes]
rs3817928	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4304190	0.86[EUR][1000 genomes]
rs6570511	0.85[EUR][1000 genomes]
rs6900087	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6900233	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6901807	0.86[EUR][1000 genomes]
rs6903424	0.97[EUR][1000 genomes]
rs6906468	0.86[EUR][1000 genomes]
rs6912639	0.86[EUR][1000 genomes]
rs6922607	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6925979	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7756434	0.86[EUR][1000 genomes]
rs7757571	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7765770	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7776356	0.86[EUR][1000 genomes]
rs9373347	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142654200-142666400	Weak transcription	HMEC	breast
2	chr6:142654200-142668800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:142654400-142666200	Weak transcription	NHEK	skin
4	chr6:142654800-142676600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:142657400-142678800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:142657600-142665800	Weak transcription	NHLF	lung
7	chr6:142659000-142666000	Weak transcription	Liver	Liver
8	chr6:142662400-142665800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:142663200-142665600	Enhancers	HUVEC	blood vessel
10	chr6:142663400-142664800	Weak transcription	HepG2	liver
11	chr6:142663400-142676400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:142663800-142664800	Weak transcription	Fetal Lung	lung
13	chr6:142663800-142665000	Weak transcription	A549	lung
14	chr6:142664200-142665600	Enhancers	Hela-S3	cervix

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