Variant report

Variant	rs11155254
Chromosome Location	chr6:142957287-142957288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11155253	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11155256	0.83[EUR][1000 genomes]
rs12190036	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12191805	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12191946	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12194448	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12197895	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12199515	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12202680	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12203291	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12203643	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12203842	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12206762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12208034	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12208386	0.83[ASN][1000 genomes]
rs12208860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209687	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12209912	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17071853	0.87[ASN][1000 genomes]
rs17071855	0.87[ASN][1000 genomes]
rs28883110	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4339484	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5005418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55669522	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55786645	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57341971	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57589155	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57818992	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57876681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57879296	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58539996	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58697749	0.80[ASN][1000 genomes]
rs59695424	0.87[ASN][1000 genomes]
rs61126241	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6570519	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6929064	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73588317	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73588318	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73588321	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73590133	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73590163	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73590192	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73590199	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7751673	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7755667	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7756064	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7766583	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7770363	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3370406	chr6:142956309-142958257	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142956000-142957600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:142956200-142957400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:142956800-142958600	Weak transcription	NH-A	brain

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