Variant report

Variant	rs12197895
Chromosome Location	chr6:142906783-142906784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11155253	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155254	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12190036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191805	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12191946	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12194448	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199515	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12202680	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203291	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203643	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203842	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12206762	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12208034	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208386	0.93[ASN][1000 genomes]
rs12208860	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12209687	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209912	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17071853	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17071855	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28883110	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4339484	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5005418	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55669522	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55786645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57341971	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57589155	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57818992	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57876681	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57879296	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58539996	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58697749	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59695424	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61126241	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6570519	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6929064	1.00[CEU][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73588317	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73588318	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73588321	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73590133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73590163	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73590192	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73590199	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7746631	0.82[EUR][1000 genomes]
rs7751673	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755667	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7756064	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7766583	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770363	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv520479	chr6:142869099-142908146	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142906200-142907800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:142906600-142907000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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