Variant report

Variant	rs11155283
Chromosome Location	chr6:143545354-143545355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143544038..143546858-chr6:143561031..143564027,2	K562	blood:
2	chr6:143520892..143523163-chr6:143544136..143548035,3	K562	blood:
3	chr6:143544257..143547136-chr6:143557817..143559656,2	K562	blood:
4	chr6:143545126..143547256-chr6:143547619..143550136,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11758699	0.81[AMR][1000 genomes]
rs11969041	0.82[YRI][hapmap]
rs12191886	0.94[CEU][hapmap];0.81[AMR][1000 genomes]
rs1989517	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs2043490	0.85[AMR][1000 genomes]
rs4896627	0.95[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6910775	0.94[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9399430	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv275228	chr6:143539833-143549921	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143514200-143545400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:143516000-143545600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:143525800-143545800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:143527400-143552000	Weak transcription	Brain Angular Gyrus	brain
5	chr6:143527400-143578800	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:143535000-143549600	Weak transcription	Lung	lung
7	chr6:143535000-143551000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:143535000-143568000	Weak transcription	Aorta	Aorta
9	chr6:143536200-143546000	Weak transcription	Right Ventricle	heart
10	chr6:143537800-143547200	Strong transcription	K562	blood
11	chr6:143541000-143545400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:143541200-143550800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:143541600-143546400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:143541800-143545800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:143542000-143545400	Enhancers	Rectal Smooth Muscle	rectum
16	chr6:143542000-143545600	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr6:143542400-143545400	Enhancers	Fetal Stomach	stomach
18	chr6:143542600-143545400	Enhancers	Fetal Brain Male	brain
19	chr6:143542600-143546200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr6:143542800-143545600	Enhancers	Fetal Lung	lung
21	chr6:143543000-143545600	Enhancers	Fetal Muscle Leg	muscle
22	chr6:143543000-143545600	Enhancers	Ovary	ovary
23	chr6:143543200-143545600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr6:143543200-143545600	Enhancers	Fetal Intestine Small	intestine
25	chr6:143543400-143545400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:143544200-143545600	Enhancers	Liver	Liver
27	chr6:143544200-143545600	Enhancers	Stomach Smooth Muscle	stomach
28	chr6:143544200-143545600	Enhancers	NHDF-Ad	bronchial
29	chr6:143544200-143546000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:143544200-143546000	Enhancers	HepG2	liver
31	chr6:143544400-143545600	Enhancers	Small Intestine	intestine
32	chr6:143544400-143545800	Enhancers	NHLF	lung
33	chr6:143544400-143554600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:143544600-143545400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr6:143544600-143545400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:143544600-143545600	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr6:143544600-143545600	Enhancers	Fetal Intestine Large	intestine
38	chr6:143544800-143545600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr6:143545000-143545400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:143545000-143545600	Enhancers	Adipose Nuclei	Adipose
41	chr6:143545000-143545600	Enhancers	Right Atrium	heart
42	chr6:143545000-143545600	Enhancers	Stomach Mucosa	stomach
43	chr6:143545000-143545800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:143545000-143546000	Enhancers	Muscle Satellite Cultured Cells	--
45	chr6:143545200-143545400	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr6:143545200-143545400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:143545200-143545400	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr6:143545200-143545400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr6:143545200-143545400	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr6:143545200-143545400	Enhancers	Rectal Mucosa Donor 29	rectum

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