Variant report

Variant	rs11158
Chromosome Location	chr6:30152467-30152468
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30146840..30149453-chr6:30151238..30153459,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1264705	0.85[EUR][1000 genomes]
rs1264706	0.85[EUR][1000 genomes]
rs1573296	0.98[EUR][1000 genomes]
rs1970	0.98[EUR][1000 genomes]
rs2023473	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2106072	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2157678	0.98[EUR][1000 genomes]
rs2517601	0.82[EUR][1000 genomes]
rs2517609	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2517617	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2517622	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2523712	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2523729	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2523978	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2844777	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2844789	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3094054	0.81[EUR][1000 genomes]
rs3094056	0.81[EUR][1000 genomes]
rs3094057	0.81[EUR][1000 genomes]
rs3094058	0.81[EUR][1000 genomes]
rs3094064	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3094066	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3094067	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3094069	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3094078	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3094620	0.81[EUR][1000 genomes]
rs3094624	0.81[EUR][1000 genomes]
rs3094625	0.81[EUR][1000 genomes]
rs3094628	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3129815	0.81[EUR][1000 genomes]
rs3129830	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3130350	0.81[EUR][1000 genomes]
rs3130351	0.81[EUR][1000 genomes]
rs3130352	0.81[EUR][1000 genomes]
rs3130353	0.81[EUR][1000 genomes]
rs3130355	0.83[EUR][1000 genomes]
rs3130364	0.81[EUR][1000 genomes]
rs3130377	0.81[EUR][1000 genomes]
rs3130380	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3130399	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3132647	0.81[EUR][1000 genomes]
rs3132648	0.81[EUR][1000 genomes]
rs8321	0.83[EUR][1000 genomes]
rs9261290	0.81[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11158	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL
rs11158	HLA-C	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30145000-30173800	Weak transcription	Right Atrium	heart
2	chr6:30148000-30152600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:30148000-30155000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr6:30148000-30173000	Weak transcription	Fetal Heart	heart
5	chr6:30148200-30154800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr6:30148400-30154000	Weak transcription	HUVEC	blood vessel
7	chr6:30149000-30152800	Weak transcription	Fetal Brain Male	brain
8	chr6:30149000-30156400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:30149200-30152600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:30149200-30152600	Weak transcription	HMEC	breast
11	chr6:30149200-30157400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:30149400-30152600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:30149400-30152600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:30149400-30152600	Weak transcription	Left Ventricle	heart
15	chr6:30149400-30152600	Weak transcription	Ovary	ovary
16	chr6:30149400-30152800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:30149400-30153200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:30149400-30153400	Weak transcription	A549	lung
19	chr6:30149600-30152600	Weak transcription	Dnd41	blood
20	chr6:30149600-30153000	Weak transcription	Osteobl	bone
21	chr6:30149600-30155000	Weak transcription	NHEK	skin
22	chr6:30149800-30152600	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:30149800-30152600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:30149800-30153400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:30149800-30153400	Weak transcription	Pancreas	Pancrea
26	chr6:30150000-30152600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:30150000-30152600	Weak transcription	Placenta	Placenta
28	chr6:30150000-30152800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:30150000-30153000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:30150000-30155000	Weak transcription	HSMM	muscle
31	chr6:30150000-30156400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:30150200-30152600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:30150200-30153000	Weak transcription	Colon Smooth Muscle	Colon
34	chr6:30150200-30156400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr6:30150200-30163400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr6:30150400-30152800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr6:30150400-30152800	Weak transcription	Small Intestine	intestine
38	chr6:30150400-30154800	Weak transcription	Fetal Lung	lung
39	chr6:30150400-30157000	Weak transcription	Fetal Kidney	kidney
40	chr6:30150600-30153200	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr6:30150600-30153400	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr6:30150600-30179200	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr6:30150800-30152600	Weak transcription	Rectal Smooth Muscle	rectum
44	chr6:30150800-30152600	Weak transcription	Hela-S3	cervix
45	chr6:30150800-30152800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:30150800-30153200	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr6:30150800-30153200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr6:30150800-30156200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr6:30151000-30152800	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr6:30151000-30153400	Weak transcription	Stomach Mucosa	stomach

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