Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30112108..30113874-chr6:30174193..30176985,2	K562	blood:
2	chr6:30107405..30110939-chr6:30112076..30114448,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11158	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1264705	0.86[EUR][1000 genomes]
rs1264706	0.86[EUR][1000 genomes]
rs1573296	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1970	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2023473	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2106072	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2157678	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2517601	0.87[EUR][1000 genomes]
rs2517609	0.88[EUR][1000 genomes]
rs2517617	0.88[EUR][1000 genomes]
rs2517622	0.95[EUR][1000 genomes]
rs2523712	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2523729	0.95[EUR][1000 genomes]
rs2523978	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2844777	0.85[EUR][1000 genomes]
rs3094066	0.81[EUR][1000 genomes]
rs3094067	0.89[AMR][1000 genomes]
rs3094069	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3094078	0.81[EUR][1000 genomes]
rs3094628	1.00[AMR][1000 genomes]
rs3115631	0.81[EUR][1000 genomes]
rs3129830	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3130380	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3130399	0.81[EUR][1000 genomes]
rs8321	0.85[EUR][1000 genomes]
rs9261290	0.83[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2844789	HLA-C	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30111400-30114000	Enhancers	HepG2	liver
2	chr6:30111800-30113600	Enhancers	Fetal Intestine Small	intestine
3	chr6:30111800-30113800	Enhancers	Fetal Intestine Large	intestine
4	chr6:30112000-30112800	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr6:30112200-30113000	Enhancers	Duodenum Mucosa	Duodenum
6	chr6:30112200-30113000	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr6:30112600-30112800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:30112600-30112800	Genic enhancers	Placenta	Placenta
9	chr6:30112600-30112800	Bivalent Enhancer	Small Intestine	intestine
10	chr6:30112600-30114200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search: