Variant report

Variant	rs11158024
Chromosome Location	chr14:55276391-55276392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55275299..55276942-chr14:55278821..55281562,2	MCF-7	breast:
2	chr14:55272779..55274320-chr14:55276133..55278224,2	K562	blood:
3	chr14:55276230..55279460-chr14:55367942..55370979,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131979	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10131232	0.91[YRI][hapmap]
rs10133650	0.85[YRI][hapmap]
rs10133662	0.89[YRI][hapmap]
rs10136563	0.84[ASN][1000 genomes]
rs10137337	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10138916	0.84[ASN][1000 genomes]
rs1040877	0.83[ASN][1000 genomes]
rs1114050	0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1114051	0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs12886870	0.83[ASN][1000 genomes]
rs12887011	0.83[ASN][1000 genomes]
rs2181049	0.83[ASN][1000 genomes]
rs2183081	0.86[YRI][hapmap]
rs2281650	0.86[JPT][hapmap]
rs2281652	0.95[JPT][hapmap]
rs2295824	0.91[JPT][hapmap]
rs3813402	0.86[CEU][hapmap];0.89[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.86[MKK][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4402472	0.89[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs4409990	0.89[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs4506812	0.89[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs4508355	0.84[ASN][1000 genomes]
rs4516125	0.84[ASN][1000 genomes]
rs4901541	0.81[JPT][hapmap]
rs4901547	0.83[ASN][1000 genomes]
rs6572975	0.83[CHB][hapmap]
rs6572976	0.83[ASN][1000 genomes]
rs6572977	0.89[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs6572978	0.83[ASN][1000 genomes]
rs6572980	0.89[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs709939	0.86[JPT][hapmap]
rs7144602	0.91[YRI][hapmap]
rs7148657	0.84[ASN][1000 genomes]
rs7150628	0.90[JPT][hapmap]
rs7151853	0.84[ASN][1000 genomes]
rs7153975	0.84[ASN][1000 genomes]
rs8006657	0.84[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap]
rs8007201	0.86[YRI][hapmap]
rs8011598	0.84[ASN][1000 genomes]
rs8011837	0.83[ASN][1000 genomes]
rs8011848	0.83[ASN][1000 genomes]
rs8013211	0.83[ASN][1000 genomes]
rs8021151	0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.84[MKK][hapmap];0.84[ASN][1000 genomes]
rs8021325	0.89[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs8021957	0.89[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs8022503	0.89[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs911614	0.86[JPT][hapmap]
rs911615	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs927379	0.84[ASN][1000 genomes]
rs927380	0.84[ASN][1000 genomes]
rs927381	0.84[ASN][1000 genomes]
rs927382	0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.84[MKK][hapmap];0.84[ASN][1000 genomes]
rs927383	0.89[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530042	chr14:55208170-55386966	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv983826	chr14:55273339-55282030	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55272600-55276600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:55273000-55281400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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