Variant report

Variant	rs7150628
Chromosome Location	chr14:55260785-55260786
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:54953298..54955664-chr14:55259319..55262021,2	MCF-7	breast:
2	chr14:55255469..55258062-chr14:55260338..55262456,2	K562	blood:

Variant related genes	Relation type
ENSG00000197045	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10136563	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10137337	0.84[ASN][1000 genomes]
rs10138916	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1040877	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1114050	1.00[CEU][hapmap];0.95[JPT][hapmap];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1114051	1.00[CEU][hapmap];0.95[JPT][hapmap];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11158024	0.90[JPT][hapmap]
rs11431	0.96[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12586289	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12886835	0.83[EUR][1000 genomes]
rs12886870	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12887011	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2181049	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2281650	0.82[CEU][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs2281652	0.96[CEU][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes]
rs2281653	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs2295824	0.84[JPT][hapmap]
rs3813402	0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4402472	1.00[CEU][hapmap];0.95[JPT][hapmap];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4409990	1.00[CEU][hapmap];0.95[JPT][hapmap];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4506812	1.00[CEU][hapmap];0.95[JPT][hapmap];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4508355	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4511452	0.87[EUR][1000 genomes]
rs4516125	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4898855	0.86[EUR][1000 genomes]
rs4901541	0.84[JPT][hapmap]
rs4901547	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4901548	0.86[CEU][hapmap]
rs6572975	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6572976	0.99[AFR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6572977	1.00[CEU][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6572978	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6572980	0.93[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs709939	0.96[CEU][hapmap];0.84[JPT][hapmap];0.91[EUR][1000 genomes]
rs7148657	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7150498	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs7151853	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7153975	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7155922	0.81[JPT][hapmap]
rs8006657	0.81[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs8011598	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8011837	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8011848	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8013211	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8021151	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8021325	1.00[CEU][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8021957	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8022503	1.00[CEU][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs911614	0.96[CEU][hapmap];0.84[JPT][hapmap];0.91[EUR][1000 genomes]
rs911615	0.99[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs927379	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs927380	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs927381	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs927382	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs927383	1.00[CEU][hapmap];0.95[JPT][hapmap];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530042	chr14:55208170-55386966	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55237600-55261200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr14:55240800-55261600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr14:55240800-55261600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr14:55241000-55263200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr14:55241200-55272200	Weak transcription	A549	lung
6	chr14:55243600-55261400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:55254600-55261400	Weak transcription	NH-A	brain
8	chr14:55256600-55261000	Weak transcription	Fetal Heart	heart
9	chr14:55257000-55260800	Weak transcription	Gastric	stomach
10	chr14:55257000-55260800	Weak transcription	Lung	lung
11	chr14:55257000-55261400	Weak transcription	Ovary	ovary
12	chr14:55257200-55261600	Weak transcription	Spleen	Spleen
13	chr14:55257200-55272400	Weak transcription	Brain Hippocampus Middle	brain
14	chr14:55257400-55261200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:55257400-55261200	Weak transcription	NHEK	skin
16	chr14:55257400-55261400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr14:55257400-55261400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr14:55257400-55261600	Weak transcription	Pancreas	Pancrea
19	chr14:55257400-55263800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr14:55257600-55261400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr14:55257600-55261600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr14:55257600-55261800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr14:55257800-55262400	Weak transcription	Osteobl	bone
24	chr14:55257800-55263200	Weak transcription	HSMMtube	muscle
25	chr14:55257800-55272400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr14:55258000-55261000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr14:55258000-55261200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr14:55258000-55261200	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr14:55258000-55261600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr14:55258000-55262200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr14:55258000-55262400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr14:55258000-55262400	Weak transcription	Colon Smooth Muscle	Colon
33	chr14:55258000-55262400	Weak transcription	HepG2	liver
34	chr14:55258000-55262800	Weak transcription	HMEC	breast
35	chr14:55258000-55262800	Weak transcription	HUVEC	blood vessel
36	chr14:55258000-55263200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr14:55258000-55265000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr14:55258000-55268000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr14:55258000-55272200	Weak transcription	Right Ventricle	heart
40	chr14:55258200-55261000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr14:55258200-55261600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr14:55258200-55261600	Weak transcription	HSMM	muscle
43	chr14:55258200-55262200	Weak transcription	Fetal Intestine Large	intestine
44	chr14:55258200-55263400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr14:55258600-55262000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr14:55258800-55261400	Weak transcription	Fetal Intestine Small	intestine
47	chr14:55259000-55261200	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr14:55259000-55261400	Weak transcription	Adipose Nuclei	Adipose
49	chr14:55259400-55261000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr14:55259400-55261000	Weak transcription	Fetal Stomach	stomach

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