Variant report

Variant	rs12886835
Chromosome Location	chr14:55267512-55267513
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55266435..55268138-chr14:55367627..55370369,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131979	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10136563	0.83[EUR][1000 genomes]
rs10138916	0.83[EUR][1000 genomes]
rs1040877	0.84[EUR][1000 genomes]
rs1114050	0.84[EUR][1000 genomes]
rs1114051	0.84[EUR][1000 genomes]
rs11158025	0.80[EUR][1000 genomes]
rs11431	0.80[EUR][1000 genomes]
rs12147333	0.80[EUR][1000 genomes]
rs12586289	0.84[EUR][1000 genomes]
rs12886870	0.83[EUR][1000 genomes]
rs12887011	0.83[EUR][1000 genomes]
rs2181049	0.84[EUR][1000 genomes]
rs2281653	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4402472	0.83[EUR][1000 genomes]
rs4409990	0.83[EUR][1000 genomes]
rs4506812	0.83[EUR][1000 genomes]
rs4508355	0.83[EUR][1000 genomes]
rs4511452	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4516125	0.83[EUR][1000 genomes]
rs4898855	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4901547	0.83[EUR][1000 genomes]
rs4901548	0.81[EUR][1000 genomes]
rs6572975	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6572976	0.84[EUR][1000 genomes]
rs6572977	0.84[EUR][1000 genomes]
rs6572978	0.83[EUR][1000 genomes]
rs7148657	0.84[EUR][1000 genomes]
rs7150498	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7150628	0.83[EUR][1000 genomes]
rs7151853	0.84[EUR][1000 genomes]
rs7153975	0.84[EUR][1000 genomes]
rs8011598	0.83[EUR][1000 genomes]
rs8011837	0.83[EUR][1000 genomes]
rs8011848	0.83[EUR][1000 genomes]
rs8013211	0.83[EUR][1000 genomes]
rs8021151	0.83[EUR][1000 genomes]
rs8021325	0.84[EUR][1000 genomes]
rs8021957	0.84[EUR][1000 genomes]
rs8022503	0.84[EUR][1000 genomes]
rs927379	0.84[EUR][1000 genomes]
rs927380	0.84[EUR][1000 genomes]
rs927381	0.83[EUR][1000 genomes]
rs927382	0.83[EUR][1000 genomes]
rs927383	0.83[EUR][1000 genomes]
rs971256	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530042	chr14:55208170-55386966	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55241200-55272200	Weak transcription	A549	lung
2	chr14:55257200-55272400	Weak transcription	Brain Hippocampus Middle	brain
3	chr14:55257800-55272400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr14:55258000-55268000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr14:55258000-55272200	Weak transcription	Right Ventricle	heart
6	chr14:55262000-55272400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr14:55262000-55274800	Weak transcription	Spleen	Spleen
8	chr14:55262200-55272400	Weak transcription	Aorta	Aorta

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