Variant report

Variant	rs11158491
Chromosome Location	chr14:63911105-63911106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:63896920..63899129-chr14:63908243..63911707,3	MCF-7	breast:
2	chr14:63904337..63908229-chr14:63908991..63915546,7	MCF-7	breast:
3	chr14:63908908..63911199-chr14:63912596..63917527,4	K562	blood:
4	chr14:63909330..63911199-chr14:63914051..63916914,2	K562	blood:
5	chr14:63910095..63912903-chr14:63913173..63914686,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10140679	0.86[CEU][hapmap];0.83[CHB][hapmap];0.88[MEX][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs10151527	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1033744	0.80[CHB][hapmap]
rs1255741	0.82[ASW][hapmap]
rs6573519	0.88[MEX][hapmap]
rs8016306	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv530774	chr14:63591348-64029881	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	nsv832815	chr14:63750058-63913900	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11158491	WDR89	cis	parietal	SCAN

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63851200-63922000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:63854800-63922400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr14:63887400-63918600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr14:63887400-63918800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:63900600-63921800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:63905000-63921600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:63905000-63925800	Weak transcription	Stomach Mucosa	stomach
8	chr14:63905200-63915600	Weak transcription	Dnd41	blood
9	chr14:63905200-63918000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr14:63905200-63918200	Weak transcription	Thymus	Thymus
11	chr14:63905200-63919000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr14:63905200-63919200	Weak transcription	K562	blood
13	chr14:63905200-63919600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr14:63905200-63937600	Weak transcription	Fetal Intestine Small	intestine
15	chr14:63905400-63912800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr14:63905400-63913800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr14:63905400-63917600	Weak transcription	Fetal Brain Female	brain
18	chr14:63905400-63917600	Weak transcription	Fetal Thymus	thymus
19	chr14:63905400-63918200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr14:63905400-63918200	Weak transcription	Fetal Intestine Large	intestine
21	chr14:63905400-63918400	Weak transcription	Fetal Stomach	stomach
22	chr14:63905400-63918800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr14:63905400-63918800	Weak transcription	Fetal Muscle Leg	muscle
24	chr14:63905400-63918800	Weak transcription	Placenta	Placenta
25	chr14:63905400-63921600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr14:63905400-63926400	Weak transcription	Aorta	Aorta
27	chr14:63905400-63937400	Weak transcription	HUVEC	blood vessel
28	chr14:63905600-63912800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr14:63905600-63915000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr14:63905600-63915000	Weak transcription	HMEC	breast
31	chr14:63905600-63915200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr14:63905600-63917600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr14:63905600-63918200	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr14:63905600-63918200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr14:63905600-63918200	Weak transcription	NHLF	lung
36	chr14:63905600-63918800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr14:63905600-63918800	Weak transcription	HSMM	muscle
38	chr14:63905600-63919000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr14:63905600-63919000	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr14:63905600-63919200	Weak transcription	NH-A	brain
41	chr14:63905600-63919600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr14:63905600-63920200	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr14:63905600-63921600	Weak transcription	Duodenum Mucosa	Duodenum
44	chr14:63905600-63921600	Weak transcription	NHDF-Ad	bronchial
45	chr14:63905600-63927000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr14:63905800-63917600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr14:63905800-63922000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr14:63906000-63914000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr14:63906000-63918200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr14:63906000-63918600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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